Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178285.1_202017-04- 21] 965 sequences; 11,764,749 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq654 134 1e-26 seq140 100 2e-16 >seq654 Length=48736 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | |||||| |||||||| || | ||| |||||||| | ||||| || ||| Sbjct 32368 CCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 32309 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || || | ||| || || ||||||||||||| ||||||||| | || Sbjct 32308 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 32249 Query 43003 ACACCTTCTTTTTCGCTGATCA-ACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| ||| |||||| || ||| |||||| || || || Sbjct 32248 ATACCTTCTTTATCTTGAATCTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 32190 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 32189 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 32142 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| ||||||||||| | || ||| || || | || ||||| ||| Sbjct 32140 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 32081 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || |||||||||||||||| |||||||| | || Sbjct 32080 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 32021 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||| || || ||| | ||| |||||| || ||| |||||| || || | Sbjct 32020 ATACCTTCCTTGTC-TTGAATTTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAA 31963 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 31962 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 31914 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | |||||| || |||| || | | || || | ||| || || Sbjct 32567 AGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACC 32508 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA----TCAACT 43027 |||||||||||||| || || || | || | |||||| || || ||| || || Sbjct 32507 GGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGAC- 32450 Query 43028 CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTA 43087 || || || ||| ||||| || || || |||| |||||||| || || || | Sbjct 32449 --TTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCA 32392 Query 43088 GAGTTTTCACAAAAATTTGCAT 43109 | || || |||||||||||||| Sbjct 32391 GTGTCTTGACAAAAATTTGCAT 32370 >seq140 Length=229783 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| |||||||| | ||||| |||||| Sbjct 8726 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8667 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 8666 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8607 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 8606 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 8547 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 8546 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365114735970