Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178285.1_202017-04- 21] 965 sequences; 11,764,749 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq654 152 5e-32 seq140 122 8e-23 seq578 118 1e-21 seq60 100 3e-16 >seq654 Length=48736 Score = 152 bits (168), Expect = 5e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| |||||||||||| | ||||||||||||||| | | Sbjct 31924 AAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATG 31865 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | || || ||||| || ||| ||||||| || || || Sbjct 31864 TTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGT 31805 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||||||||| |||||||| ||||| | ||||| | ||| ||| ||| ||||| Sbjct 31804 TGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCG 31745 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| || || | ||| || |||||||||||||| Sbjct 31744 GAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 31686 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||| ||||| ||||| || || || | | Sbjct 32152 AAAATTTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATG 32093 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || || | || ||||| || || ||| |||| || |||||||| Sbjct 32092 TTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGT 32033 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||||||||| ||||| | |||||| |||||| | | | |||||| Sbjct 32032 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCG 31973 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || || ||||| Sbjct 31972 GAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 31914 Score = 118 bits (130), Expect = 1e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||||| || |||||||||||| | ||||||||||||||| | Sbjct 32381 AAAAATTTGCATACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGAT 32322 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || || | ||| || || || || || |||| || ||||| || Sbjct 32321 GTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTG 32262 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| ||||| ||||||||||| || | ||| || |||||| | | | |||||| Sbjct 32261 TTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTC 32202 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || || ||||| Sbjct 32201 GGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 32142 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| | ||| || | ||| | ||| || |||||||| | || || || | Sbjct 32596 CCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 32537 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || || || || ||| |||| || ||||||||||| ||||||||| Sbjct 32536 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 32477 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | |||||| | ||| ||| | | | |||||||| || || Sbjct 32476 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 32417 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || || || || ||||| || ||||| Sbjct 32416 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 32370 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || || || || ||||| || | ||| ||||| || || | || || | Sbjct 31665 CAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTA 31606 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| ||||||| |||||||| ||||||||||| |||||||| ||||| | || Sbjct 31605 GCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAA 31546 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 |||| | ||| ||| | ||| || || | || || || | || |||||||| | Sbjct 31545 TTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTAC 31486 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||| || || || |||||||| Sbjct 31485 CGGTCAAAGTCTTGACGAAAATCTGCAT 31458 >seq140 Length=229783 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| |||||||| | ||||||||||||||| | ||| || ||| | Sbjct 8726 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8667 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| || || || ||||||| |||||||| || || || ||| Sbjct 8666 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8607 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || | |||||| | | | |||||||| || || Sbjct 8606 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 8547 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || | ||| || || || || ||||| Sbjct 8546 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 8500 >seq578 Length=295883 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| || ||||||||||| ||||| ||||| | ||| || || | Sbjct 45840 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 45781 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | || |||| || || || ||||||| |||||||| || || || || Sbjct 45780 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 45721 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| |||| |||||| | | | |||||||| || || Sbjct 45720 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 45661 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || | |||||||| || ||||| | ||| || ||||| Sbjct 45660 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 45623 >seq60 Length=15309 Score = 100 bits (110), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| ||| ||||| || ||||| ||||||||||| | ||| || | | Sbjct 601 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGT--CAG 658 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| | || |||| || || || ||||||| |||||||| || || || | Sbjct 659 ATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 718 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||| ||||| | || || | |||||| | | | ||||||| || | Sbjct 719 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAA 778 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || | |||||||| || ||||| | ||| || || ||| Sbjct 779 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAG 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285792487400