Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178285.1_202017-04- 21] 965 sequences; 11,764,749 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq865 140 2e-28 seq654 129 4e-25 seq578 109 4e-19 seq140 105 4e-18 >seq865 Length=2844 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 310 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 369 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 370 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 404 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 2298 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 2357 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 2358 GCCAATATTTAGCTTTA 2374 >seq654 Length=48736 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||||||||| |||||||| |||||||| || ||||| |||| Sbjct 31914 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 31855 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | |||| |||| || || |||||||| || | | |||||||| | | Sbjct 31854 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 31795 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||||| ||| || || | || || || ||||| Sbjct 31794 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 31735 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || |||||||| ||||| || || || || |||||||| Sbjct 31734 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 31686 Score = 125 bits (138), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | | ||| | ||| | ||| |||||| ||||| |||||||||| Sbjct 31686 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 31627 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| |||| || || |||||||| || | | ||||||||| Sbjct 31626 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 31571 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||| ||||| |||||| ||| || || | || ||||| | | Sbjct 31570 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 31511 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || |||||||| ||||| || || ||||| |||||||| Sbjct 31510 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 31458 Score = 105 bits (116), Expect = 4e-18 Identities = 168/239 (70%), Gaps = 9/239 (4%) Strand=Plus/Minus Query 38084 ATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 |||| |||||||| ||||| | ||| || | ||||||||| ||||||||||||||||| Sbjct 32604 ATCAGTTACCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGT 32545 Query 38143 AATCAGACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGT 38198 | || |||| |||| | || |||| ||| || |||||||| || | | ||| Sbjct 32544 AGTCCGACA----GCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGC 32489 Query 38199 TGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT 38258 || || | || | ||||| ||||| |||||| ||| || || | | ||| || Sbjct 32488 TGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCA 32429 Query 38259 CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||| |||| || ||||| ||||| |||| || || || || || ||||| Sbjct 32428 GAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 32370 Score = 104 bits (114), Expect = 2e-17 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | |||||||||||| | || ||| || ||||| || ||||||| Sbjct 32142 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 32083 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| || | ||| || |||||||| || | | ||||||||| Sbjct 32082 ACA----GCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCT 32027 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | || | ||||| ||||| |||||| || || || | | ||| || | | Sbjct 32026 GGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGAT 31967 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| |||| || ||||| || || || | ||||| ||||| || ||||| Sbjct 31966 TCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 31914 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| | ||||||||| |||||||| |||||||| || ||||| |||| Sbjct 32370 TACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 32311 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || |||| ||| || || ||||| || | | |||||||| | | Sbjct 32310 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 32251 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||| || || || || | | ||| || | ||||| Sbjct 32250 GGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 32191 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||| || ||||| || || || | ||||| ||||| || ||||| Sbjct 32190 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 32142 >seq578 Length=295883 Score = 109 bits (120), Expect = 4e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || || || | |||| || |||||||| ||||| |||| Sbjct 45842 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 45783 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | |||| || ||||| || || ||||| || | | |||||| || | | Sbjct 45782 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 45723 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| ||| ||| ||||| | | ||| || | ||||| Sbjct 45722 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 45663 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 |||| || || || || ||||| ||||| || || || || Sbjct 45662 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 45623 >seq140 Length=229783 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || || Sbjct 8727 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 8668 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | | || || ||||| || || ||||| || | | |||||| || | || Sbjct 8667 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8608 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||| | | ||| || | |||||| Sbjct 8607 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8548 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | |||||||| ||||| || || || || ||||| || ||||| || Sbjct 8547 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943260706915