Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178295.1_202017-04- 21] 2,127 sequences; 12,105,808 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 >seq1 Length=516214 Score = 118 bits (130), Expect = 1e-21 Identities = 528/830 (64%), Gaps = 21/830 (3%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || ||| |||||||||||| ||||| || || || || | || || || ||| Sbjct 280164 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 280223 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| ||||| || || |||| | |||||||| | | || || | | ||| Sbjct 280224 TCCATGAAATCGAAGGGGTTTTCGACATTGTAGTATTTCTTGTTACCGAAAGCGACCAAC 280283 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 | ||| || || || || || | || || |||||||| ||| |||||| |||| || Sbjct 280284 AGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAA 280343 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 ||| || | || || || | ||| ||| || | || || || ||| || Sbjct 280344 GCAACTGGTAAGGCGTCCAAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAAT- 280402 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTAAT----AAGTGTTTAAACATTATACAAGC 16239 | || | || | | | ||||| | || || |||| | || || Sbjct 280403 --TTTTTCAACGATGGCT-GGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGC 280459 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||| || ||||| |||||||| |||| || || ||||| ||||| || | ||| || Sbjct 280460 AAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGG 280519 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| | |||| ||||| | ||| || || | |||||| ||||| || || || | ||| Sbjct 280520 CATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACC 280579 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419 ||||| | |||||| ||||| | || ||||| || | || ||||| Sbjct 280580 TTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGAATCCA 280639 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTC----ATGTTCTCTATTGCATTAA 16475 | || |||||| | || | | | || | ||| ||| | | || ||||| | Sbjct 280640 TCTTAAAGCCCATTCGGCCT----TCTCACCGATTTCTGGGATGGTGTGAATGGCATTGA 280695 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 | || | | ||||||| || || |||||||| || | || || ||| Sbjct 280696 ACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGTATCGATCAACAAGGAGTAAGTTT 280755 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || |||||||| || || || || ||||| || || | | || || | |||| Sbjct 280756 CAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTT 280815 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 | ||||| | | | || |||| | |||||||| ||||| || || || ||| || | Sbjct 280816 GGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGA 280875 Query 16656 AAAACGCAAGTA-TGTGTTTAATAAAAtttttttCGTTATCTGAAAGT---TTTAACCAG 16711 |||| ||||| | | || ||| ||| | | ||||| || | | || |||| Sbjct 280876 AAAAGGCAAGAACTCTG-GAAATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAG 280934 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 ||| | ||| || || ||||| | ||||| | ||||| |||||||| Sbjct 280935 TCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAAGC 280984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462499702962200