Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178295.1_202017-04- 21] 2,127 sequences; 12,105,808 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq25 114 3e-20 seq2 104 6e-17 >seq25 Length=57060 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | |||||||||| || || || || || Sbjct 25925 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAA 25984 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||||||| ||||| ||| ||||| || ||||||||||||| || || Sbjct 25985 GATCAACCTCTGTTGA---TCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAAC 26041 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| ||||| || || | ||||| || || ||||||| |||||| Sbjct 26042 GTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTT 26101 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 26102 AACAAAGATCTGCAT 26116 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || || || || ||||| | ||| || || || || || || || | Sbjct 26118 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 26177 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 ||||| | |||||||||| || || || || ||||||| | |||||| ||||| Sbjct 26178 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGA---TCTGGA 26234 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || || ||||||| || ||||| || || | |||| ||||| Sbjct 26235 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 26294 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| | || || || || ||||||| |||||||||||| |||||||| || Sbjct 26295 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAAT 26347 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||| ||| || || || || Sbjct 25469 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAA 25528 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||||||| ||||| ||||||||||| || ||||| ||| ||||| Sbjct 25529 AATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTT 25588 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| ||||| || || || || || |||||||| || ||||| ||||| Sbjct 25589 GTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGAC 25648 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 25649 GAAAATTTGCAT 25660 >seq2 Length=461961 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | || | || ||||| ||||| || || || || Sbjct 8661 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAA 8602 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||| | ||| || ||||| || || ||||| || | || || || Sbjct 8601 GATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 8542 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| || || || ||||| ||||| | ||||||||| Sbjct 8541 GTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGAC 8482 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 8481 GAAAATTTGCAT 8470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179622251837106