Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178295.1_202017-04- 21] 2,127 sequences; 12,105,808 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25 111 1e-19 seq2 100 2e-16 >seq25 Length=57060 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | |||||||||||| | || ||| || |||||||||||||| || Sbjct 25662 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 25721 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| ||||||||||| || || | ||||| || || || Sbjct 25722 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 25781 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | |||||| | || ||||| || || Sbjct 25782 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAAC 25840 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| || ||||| || | || || |||||||| ||||| Sbjct 25841 CTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 25888 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||||||||| || ||||| |||||||| ||||| || || || Sbjct 25890 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 25949 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| || || ||||||||||| || || | |||||| || || || Sbjct 25950 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 26009 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | |||||| || || ||||| | || || Sbjct 26010 ATACCTTCCTTGTCCTGGAT-TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 26068 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||||||||| || || || ||||| |||||||| Sbjct 26069 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 26116 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||| | ||| | ||| |||||| |||||||| ||||| || Sbjct 26118 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 26177 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| || || ||||||||||| || || | ||||| || || || Sbjct 26178 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 26237 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | |||||| | || || || || || Sbjct 26238 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAAC 26296 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| ||||||||||| || || || || ||||||||||| Sbjct 26297 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 26344 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||||||||| || || || || || |||| | ||||| ||||| Sbjct 25230 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGC 25289 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || || | || ||||| || || | || ||||||||| ||| ||| Sbjct 25290 TTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCT-TGAATTTT 25348 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | |||||| | ||| ||||| || || || | |||||| || ||||| || Sbjct 25349 CGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGT 25408 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || |||||||| ||||| Sbjct 25409 CAGTGTCTTGACAAAAATTTGCAT 25432 >seq2 Length=461961 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || ||||| |||||||| ||||| || || || Sbjct 8696 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8637 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||| ||||| ||||| || || | |||||||| || || Sbjct 8636 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8577 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | ||| ||||| || || Sbjct 8576 ATACCTTCCTTGTCTTGGATCTTG-GACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8518 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| ||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 8517 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 8466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721441323591