Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178305.1_202017-04- 22] 3,318 sequences; 12,557,627 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1127 131 3e-25 seq5 125 1e-23 >seq1127 Length=497743 Score = 131 bits (144), Expect = 3e-25 Identities = 231/335 (69%), Gaps = 20/335 (6%) Strand=Plus/Plus Query 35295 ATACAGACGCCAAAGAATTGGCCAAG-AAGAAGATACACATCTGGAACGCTAATGGGTCG 35353 |||||||||| || |||| | || ||| | || | || ||| ||| |||||| || Sbjct 56612 ATACAGACGCTAACCTATTGTCTGAGCAAGGTGTTA-AGATTTGGGACGGTAATGGATCT 56670 Query 35354 CGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTA 35413 || |||| ||| || | | ||||| | ||||| || |||||| |||| ||||| Sbjct 56671 CGTGAATATTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTT 56730 Query 35414 TACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACT 35473 || ||||| |||||| | |||||||||||| |||| | || || | ||| |||||| Sbjct 56731 TATGGATTTCAATGGAGGCATTTTGGTGCTAAATACAAGACGTGCGATGACGACTATACT 56790 Query 35474 GGAAAGGGTATTGATCAATTG-GCCA--------ATATACTAAAGACCCTGAGAGAAAAT 35524 ||| | ||||||||||||||| || ||| ||||||||| |||| Sbjct 56791 GGACAAGGTATTGATCAATTGAAACAGGTTATTCATAAACTAAAGAC---------AAAT 56841 Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || | |||||||| || ||||||| || ||||| || ||| || || |||||| Sbjct 56842 CCCTACGATAGAAGAATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCT 56901 Query 35585 CTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | || |||||||| || | | || || ||||| Sbjct 56902 TTGCCGCCATGCCATATTTTTTCACAGTTCTATGT 56936 >seq5 Length=299024 Score = 125 bits (138), Expect = 1e-23 Identities = 297/444 (67%), Gaps = 15/444 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| | ||||||| |||| || ||| | || || |||||||||||| Sbjct 237042 GTTGCCTTTGCCTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGG 237101 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||||| |||| ||| | |||| ||||| || || || | ||| ||| Sbjct 237102 TTGAAAAAGAGAGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGAC 237161 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||||||||||| || |||| | |||| || | | Sbjct 237162 GAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCA----TTTGAAGA---ACAA 237214 Query 102098 TCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || ||| ||| |||||||||| || || || |||||||||| || Sbjct 237215 ACCAGACCCAGCCATTGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGATA 237274 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 || | || | || ||| || | || |||||| | || |||| ||| || Sbjct 237275 CTTCTTGGACGCCTTACCAGTTGCTTTGCTAGGTATGAACGCTGACTTAATGAACCAATA 237334 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAAT 102271 | |||| || || || || | ||| ||||| | | || || ||||| |||| || Sbjct 237335 CGTTGAGTTCGTCGCCGACAGACTGTTGGTCGCTTTCGGTAACAAGAAA--TACTACAAG 237392 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || ||||||||| |||||||| || || ||| | | |||||| ||||| || Sbjct 237393 GTCGAAAACCCCTTCGATTTCATGGAAAACATCTCCTTGGCCGGTAAGACTAACTTCTTC 237452 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||| | || || ||| Sbjct 237453 GAAAAGAGAGTTTCTGACTACCAA 237476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989541930928690