Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178305.1_202017-04- 22] 3,318 sequences; 12,557,627 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 129 7e-25 >seq5 Length=299024 Score = 129 bits (142), Expect = 7e-25 Identities = 484/746 (65%), Gaps = 30/746 (4%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| |||||||| || |||| | ||||| ||||| || ||||| || | Sbjct 237491 CATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGC 237432 Query 92850 CAAAGATATCGAATTCACT---AGTGATTGGATTCTTGGCGTTATAATA---CTTTTCAC 92903 ||| || || | ||| | | || || || | | | || || || ||| | || Sbjct 237431 CAAGGAGAT-GTTTTCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTAC 237373 Query 92904 CGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC 92963 ||| | || ||| | ||| || || || || || | ||| || ||| || ||| Sbjct 237372 CGA---AAGCGACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAG 237316 Query 92964 AATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCT-CGATTA 93020 ||||| ||||| | | || |||| ||||| |||||| |||||| | | ||| Sbjct 237315 CGTTCATACCTAGCAAAGCAACTGGTAAGGCGTC---CAAGAAGTATCTTTGTTCAATTT 237259 Query 93021 CAACGGCTTCTTTCAAGATTTCTATTACTCTACTATT--TGG---TGGTTT-TTGTACGA 93074 | || || || | | |||| | || || || ||| |||||| || | | | Sbjct 237258 CCACAGCCTCGGTGACAATTTTT-----TCAACAATGGCTGGGTCTGGTTTGTTCTTCAA 237204 Query 93075 CATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT 93134 || | ||| ||||| ||||||||||| || ||||||||||||| | ||||| | Sbjct 237203 -ATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATT 237145 Query 93135 CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAA 93194 | ||| || |||||||| || | || |||| || || | ||| || || || |||| Sbjct 237144 CGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAA 237085 Query 93195 AACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAAT 93254 | ||| || ||||| | |||||| | || ||||| || || | | ||| |||| Sbjct 237084 AGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACA 237025 Query 93255 TTGCGGAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 ||| | | || |||||| |||||||||| ||||| || | || || Sbjct 237024 AGGCGTCA-GCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGG 236966 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 | || | || || || || | | | || | || | | || ||||| |||||| Sbjct 236965 ATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGTATCG 236906 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 || |||| || || ||||||| || | ||| || || |||||||| ||||||||| Sbjct 236905 ATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAA 236846 Query 93434 CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACT 93493 | | || || | || || ||||| || || | || || | |||||||| || Sbjct 236845 CTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACA 236786 Query 93494 ATACCATCGGATGCTGCaaaaaaaGC 93519 ||||| || || || || ||||| || Sbjct 236785 ATACCGTCAGAAGCGGCGAAAAAGGC 236760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556837704198320