Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178355.1_202017-04- 21] 1,182 sequences; 11,760,436 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq37 114 3e-20 seq21 104 6e-17 seq1010 102 2e-16 >seq37 Length=47982 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || || || || ||||| | ||| || || || || || || || | Sbjct 30911 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 30852 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 ||||| | |||||||||| || || || || ||||||| | |||||| ||||| Sbjct 30851 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGA---TCTGGA 30795 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || || ||||||| || ||||| || || | |||| ||||| Sbjct 30794 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 30735 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| | || || || || ||||||| |||||||||||| |||||||| || Sbjct 30734 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAAT 30682 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | |||||||||| || || || || || Sbjct 31104 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAA 31045 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||||||| ||||| ||| ||||| || ||||||||||||| || || Sbjct 31044 GATCAACCTCTGTTGA---TCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAAC 30988 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| ||||| || || | ||||| || || ||||||| |||||| Sbjct 30987 GTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTT 30928 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 30927 AACAAAGATCTGCAT 30913 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||| ||| || || || || Sbjct 31560 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAA 31501 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||||||| ||||| ||||||||||| || || || ||| ||||| Sbjct 31500 AATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTT 31441 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| ||||| || || || || || |||||||| || ||||| ||||| Sbjct 31440 GTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGAC 31381 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 31380 GAAAATTTGCAT 31369 >seq21 Length=103245 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | || | || ||||| ||||| || || || || Sbjct 8670 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAA 8611 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||| | ||| || ||||| || || ||||| || | || || || Sbjct 8610 GATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 8551 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| || || || ||||| ||||| | ||||||||| Sbjct 8550 GTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGAC 8491 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 8490 GAAAATTTGCAT 8479 >seq1010 Length=310 Score = 102 bits (112), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||| ||| || || || || Sbjct 188 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAA 129 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||||||| ||||| ||||||||||| || || || ||| ||||| Sbjct 128 AATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTT 69 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| ||||| || || || || || |||||||| || ||||| ||||| Sbjct 68 GTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGAC 9 Query 288462 GAATAT 288467 ||| || Sbjct 8 GAAAAT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179636534871396