Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178385.1_202017-04- 21] 464 sequences; 11,758,293 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq34 105 6e-18 seq4 89.7 5e-13 seq13 84.2 2e-11 >seq34 Length=79252 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| |||| || || | || || | || || ||| | | Sbjct 27637 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 27696 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| |||||| |||||||| ||||| || || ||||| Sbjct 27697 GACACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 27756 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | |||| | || || ||||| ||||||| ||||| |||| | | |||| Sbjct 27757 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTG--ACTACA 27814 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||| ||||| || |||| | ||||| ||||||||||| || Sbjct 27815 ACATCCAAAAGGAATCTACTCTTCACCTGGTGTTGAGATTGAGAGGTGG 27863 Score = 102 bits (112), Expect = 7e-17 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || ||| | || || || | || || | || || ||| | Sbjct 27865 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 27924 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||||| || || || ||||| || || || ||| Sbjct 27925 GACACTATTGACAACGTTAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 27984 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 |||||| | || | | ||| |||||||| ||||||| ||||| |||| | | |||| Sbjct 27985 CAAAGATTGATCTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGG--ACTACA 28042 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCAT 25412 |||||||||| || ||||| |||| | || || || ||||| || || || |||||| Sbjct 28043 ATATTCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTTGAGGGGTGGTAACTGATCAG 28102 Query 25413 TC 25414 || Sbjct 28103 TC 28104 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| ||| | ||||| | || || ||| || | Sbjct 27181 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 27240 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||||| || || || ||||| || || ||||| Sbjct 27241 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 27300 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || | || | | ||| || || || ||||| | ||||| |||| | | |||| Sbjct 27301 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTG--ACTACA 27358 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||| ||||| || |||| || ||||| ||||||||||| || Sbjct 27359 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 27407 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| | || || || | || || | || || ||| | Sbjct 27409 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 27468 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || |||||| || || || ||||| || || ||||| Sbjct 27469 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 27528 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 |||||| | || | | ||| || ||||| ||||| | ||||| |||| | |||| | Sbjct 27529 CAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTG--ATTATA 27586 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | ||||| ||||| || || | ||||| ||||| ||||||||||| || Sbjct 27587 ACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 27635 >seq4 Length=409361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || || || || || | ||||| | ||||| ||| | || ||||| Sbjct 365222 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 365163 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || || ||| ||| || || || ||||| || || || || |||||| | Sbjct 365162 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 365103 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | || || ||| | ||||| | ||||| |||| | | ||||| ||||||| Sbjct 365102 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTG--ACTACAACATTCAAA 365045 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||| | || ||||| || ||||||||||| || Sbjct 365044 AAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 365005 >seq13 Length=186795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || || || || |||||||| || | || || | ||||| ||| | Sbjct 178312 CAAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATC 178253 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||||| || | || || || || || || || ||||| || || || Sbjct 178252 TTCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGA 178193 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||| | || | | || || ||| | ||||||| ||||| | | ||| || Sbjct 178192 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTA 178133 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| ||||| || | || || || || ||||||||||| || Sbjct 178132 CAACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 178082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091818452480