Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178395.1_202017-04- 21] 2,388 sequences; 12,002,900 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq385 176 1e-38 seq2 152 1e-31 seq558 145 2e-29 seq485 138 3e-27 seq5 132 1e-25 seq8 125 2e-23 >seq385 Length=63491 Score = 176 bits (194), Expect = 1e-38 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| | |||||||| ||||||||||| || ||| Sbjct 33016 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCA 32957 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | ||||||||||| ||||| || ||||||||||| |||||||| ||| Sbjct 32956 GCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTG 32897 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || ||| |||||||| || ||||||||||| || ||||| Sbjct 32896 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 32837 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 32836 TTGACAAAAATTTGCAT 32820 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || |||||||| || || || |||||||| || || ||| Sbjct 32593 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 32534 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||||||||||||||| || || || ||||| || | || |||||||| ||| Sbjct 32533 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 32474 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || | || || || || | ||||||| || ||| Sbjct 32473 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 32414 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || ||||| || | || || || || |||||||| Sbjct 32413 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 32364 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| ||||| || || |||||||| ||||||||||| || || Sbjct 33244 GTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCG 33185 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || || || || ||||| || ||||| || || ||||| || | || Sbjct 33184 GCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTA 33125 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| |||||||| || ||||||||||| || ||||| Sbjct 33124 ACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 33065 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 33064 TTGACAAAAATTTGCAT 33048 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| | ||||||||||||||||| || || || Sbjct 32788 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCG 32729 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||||||||| ||||| || ||||| || ||||| || || | || Sbjct 32728 GCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTA 32669 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | ||| ||||||| || || || ||||| || | || Sbjct 32668 ACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTC 32609 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 32608 TTAACAAAGATCTGCAT 32592 >seq2 Length=423952 Score = 152 bits (168), Expect = 1e-31 Identities = 377/564 (67%), Gaps = 26/564 (5%) Strand=Plus/Minus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 ||||| | |||| |||||||| ||||| | |||||| | ||| ||||| | || | Sbjct 188875 TACAAGCGTGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATC 188816 Query 268805 ATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCG 268861 || ||||| || || ||| |||| || ||| || || || ||||||| Sbjct 188815 CATGACTGGAACAACAGAATGAACGAGAACGAGAGATTTTTCATTTCCAGAGTTCTTGCC 188756 Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921 ||||| || | | ||| ||||| ||||| ||||| | || || || |||| || Sbjct 188755 TTTTTCGCCGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAA 188696 Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981 || || ||||| || || | |||| ||||| ||||| || || ||||||||||| Sbjct 188695 GTCCAAATTCCAGAGGCAAAGAGTTTCTACGGTTTCCAAATCATGATTGAAAATATTCAC 188636 Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-G 269040 || || | ||| | || || |||||||| || | || | ||||||| | Sbjct 188635 TCTGAAACTTACTCCTTGTTGATCGATACTTACATCAAGGAC-----CCTAAAGAAAGTG 188581 Query 269041 ACTATTTTCTTCTATGAGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATG 269091 | | | || ||| ||| | || || | | | ||||||| | ||||| Sbjct 188580 AAT-TCTTGTTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGG----CCGAATG 188526 Query 269092 GGCTCTGAAATGGATAAACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGC 269148 |||| | | |||||| | || | |||||| || ||||| ||||||| ||||| Sbjct 188525 GGCTTTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTTGCCTTTGC 188466 Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 | | | |||||| | || || || || || |||||| | || || |||||||| || || Sbjct 188465 CTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGGTTGAAAAAGAG 188406 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 ||| | ||||| || ||||| || || ||||||||||| | || ||||||||||| || Sbjct 188405 AGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGACGAAGGTTTGCA 188346 Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292 | |||||| || || || || || Sbjct 188345 CACCGACTTTGCATGCTTGTTGTT 188322 >seq558 Length=226 Score = 145 bits (160), Expect = 2e-29 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | || | ||| || ||||| ||||||||||| ||||| ||| Sbjct 198 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 139 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| ||||| || || |||||||| | || |||||||| ||| Sbjct 138 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGA 79 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| || || ||||| ||| ||||| || || || | || ||| || ||| Sbjct 78 GGAATACCTTCCTTGTCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTC 20 Query 104509 TACCTCTAGTGTAATAGTC 104527 |||||||| || |||||| Sbjct 19 AACCTCTAGGGTTATAGTC 1 >seq485 Length=80715 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | |||||| || ||||| || || || || |||||| Sbjct 17571 ATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 17512 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 17511 GATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 17452 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || ||||| || | ||| || || ||| Sbjct 17451 GGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCA 17392 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | || || ||||||||||| Sbjct 17391 ACTTCCAAAGTGATGGTCTTACCAGT 17366 >seq5 Length=342310 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| || || || |||||||| ||||| || |||||| Sbjct 296737 ATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA 296796 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 296797 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 296856 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 296857 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 296916 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | || || ||||| Sbjct 296917 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 296957 >seq8 Length=256907 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| |||||||| || || || || ||||| || | ||||||||| ||||| | ||| Sbjct 247435 TGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGC 247494 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || || ||||| Sbjct 247495 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 247554 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || || || ||| || || || |||||||||||||| || Sbjct 247555 GACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTT 247614 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 247615 AAAGTCTTGACGAAAATTTGCATCTTG 247641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151363171526704