Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178395.1_202017-04- 21] 2,388 sequences; 12,002,900 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 seq5 224 1e-53 seq2041 158 1e-33 >seq2 Length=423952 Score = 230 bits (254), Expect = 3e-55 Identities = 608/916 (66%), Gaps = 17/916 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| ||||| || || | || || || | Sbjct 188040 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 188099 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||| || || |||| || || || ||| ||| || || | | | Sbjct 188100 TCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAAGCGACCAAC 188159 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 188160 AGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAA 188219 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| |||| || || ||||| | |||| |||| || | || ||||| | | || Sbjct 188220 GCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 188277 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| ||| ||||||| Sbjct 188278 TTTTTTCAACGATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 188337 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||||| |||||||| || ||||| |||||||| |||| Sbjct 188338 AGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCA 188397 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| ||||| |||||||| || || ||||| || || || || || | ||||| Sbjct 188398 TCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTT 188457 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| |||||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 188458 CAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 188516 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| || ||||||| | ||| || || | || | ||| || | | Sbjct 188517 CTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACA-A 188575 Query 19207 TACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | || | || ||| || || || | || | ||| ||||| || ||| |||| Sbjct 188576 GA-ATTCACT-TTCTTTAGGGTCCTTGATGTAAGTATCGATCAACAAGGAGTAAGTTTCA 188633 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||||||||| || || || || ||||| |||| |||| |||| || || Sbjct 188634 GAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGG 188693 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | | || |||| ||||| ||||||||||| || || ||| ||| || ||| Sbjct 188694 ACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAA 188753 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAATC 19439 || || | || ||| ||| | | || | | ||| || | ||||| || Sbjct 188754 AAGGCAAGAACTCTGGAAATGAAAAATCTCTCGT-TCTCGTTCATTCTGTTGTTCCAGTC 188812 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 || ||||| ||||| ||||| | ||||||| | ||||| |||||||| || || || Sbjct 188813 ATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGCACGCTT 188872 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 || | ||| || ||| | || | ||||| || | |||| ||| | || | ||| Sbjct 188873 GTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTCTCCTTGTCTTC 188932 Query 19560 TTTAAGAATAGGTTCC 19575 || | | ||||||| Sbjct 188933 ATTCAACAAAGGTTCC 188948 >seq5 Length=342310 Score = 224 bits (248), Expect = 1e-53 Identities = 1113/1762 (63%), Gaps = 58/1762 (3%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| ||| || ||||||||||| |||||||| |||| || ||||||||||||||| Sbjct 128847 GTTCTTAAGTAGTACATACCAGTTTTTAAACCCTTCTTCCAACCGTAGAAATGCATACTA 128788 Query 47073 GTTAATTTAGA-ATAACTAGGTTCT-GAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 || | ||| || | ||| || | || | || ||| | || ||| |||||| | Sbjct 128787 GTAATCTTACCCATTGAT-GGTGCTTGCAAGAA-AAGATTCAAGGAATGAGACTGATCGA 128730 Query 47131 T--AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 | | ||| | | |||||| ||||||| | ||| | |||| | || ||||| || Sbjct 128729 TGTAGATGG--CACGATCAGCAGCCATATTGATAATGGTCTTTTGAGAGATTTCCCAGAC 128672 Query 47189 TGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAG-TATT--TTGAATAGATCCTCC 47245 ||||| || | || || | |||| ||| | ||| | || ||||||||| || Sbjct 128671 GGTTTTGTATAGTTCCTTCAATTCTTGTGGCACATTTGGTAAGCCTTGAATAGAACCA-- 128614 Query 47246 gttttctataatt-----ttgttttttaat-tcatttgaccaaagttttcgttc-agtta 47298 |||| | ||||| |||||| || | |||| ||||| | || | | | Sbjct 128613 -TTTTGTGTAATTAGATATTGTTTCATACTATCATC---CCAAATACCCAGGTCGACTAA 128558 Query 47299 at---gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGC 47355 || || | ||| ||| ||||||||| ||| ||||| ||||| || || | ||| Sbjct 128557 ATCACGTAGT--AAATATG--GATTAACAACTTGGAATTCACCAGACAGGACACGACGAG 128502 Query 47356 TATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTG 47415 || || || || |||||| | ||||||||| |||| |||||| | ||||| Sbjct 128501 AGTACATGTTTGAGGTCACTGGTTCGAAGCATTCATTATAACCAAGAATTTGGGAAGTTG 128442 Query 47416 ATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNN 47474 | || || ||||| | ||| | || | | | ||||||| |||| ||| || | Sbjct 128441 AGGCGGTTGGCATTGGTGCCA-TAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCC 128383 Query 47475 NNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGA 47534 || ||||||||| | | |||| | | ||||| | ||| |||| Sbjct 128382 TTTCTTAAGGTTTCCCAATCCCACATGCCAAATGGTTTAGCGTTCCACATATCGAATTGT 128323 Query 47535 AGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCG 47594 | ||| || ||| |||||||| | | | || ||| ||| | | || || Sbjct 128322 AAAATACCCTTAGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCC 128263 Query 47595 AGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGA 47654 | |||||| ||||| | | | || || || ||||| || |||| | |||||||| Sbjct 128262 AATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGA 128203 Query 47655 TTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNA-ATGTATCTGCCAATCC 47713 | ||| || |||||||| || || | | ||||| ||||| || Sbjct 128202 GTTTGAGCTACTTCCGATTCAAAGGG-TAGACGCAACATCATATAAGTATCGGCCAAACC 128144 Query 47714 TTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGG 47773 || ||||||| | |||| |||||||| | |||| ||| ||| || || | ||| Sbjct 128143 CTGGACACCAAGAGCAATAGGTCTATGCTTCATATTTGAATTTCTAGCCTCGGGAACTGG 128084 Query 47774 ATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCT 47833 ||| | || || |||| | | || | |||| || Sbjct 128083 ATAGTAATTACGGTCGATAACTCTGTTCAAGTTGTGAGTAATGACTTTAGCAATCTCGTG 128024 Query 47834 TAATTTATTAAAATCAAA-CTTGTTATTTATAACA--------AACCT------ATTA-- 47876 |||| | | |||| | | |||| ||| || || ||||| || Sbjct 128023 TAATCTCTCGAAATTATAGCTTGCAGTTT-TACCATCTTCTGAAACCTCAACGAATGCTG 127965 Query 47877 --AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTA 47934 || || ||||| |||| |||||| || || |||| || | ||||| | | Sbjct 127964 GTAGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCCGGGGAGGAATATTCGACGA 127905 Query 47935 TTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGT 47994 ||||| ||||| |||| ||||||||||||| || || || || || | ||| Sbjct 127904 TTTCACAACATAAATTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTGT 127845 Query 47995 TACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 ||||||||||||| |||| ||| |||||||| || |||||| |||| | || | || | Sbjct 127844 TACATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATGG 127785 Query 48055 ATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAG 48114 | ||| | | | | | ||||| | | | || | | || |||||| || Sbjct 127784 CATACCACA-ACTTTTGGGCTTTA--ATTGTTTTACCACGACCTTCTCTTTCGTAACGAG 127728 Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGAC 48174 |||||| | ||||||||||| || |||||| |||||| || || || | || Sbjct 127727 TATATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGCG 127668 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 | | ||| | |||| | |||| | || || | |||| || | ||| || ||||| | Sbjct 127667 AAAACAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCATA 127608 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 |||| || ||||| || | | | |||||| || ||| | || | | || | Sbjct 127607 GAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCGA 127548 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 |||||| | ||||| ||||||||||| || || | | || | |||| |||| | Sbjct 127547 CAAAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCT 127488 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | ||||| || || || | ||| | ||||||||| || |||| | | ||| || | | Sbjct 127487 TGTTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATCA 127428 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 || ||||| |||| ||||| || | |||||| || | | | || || | | Sbjct 127427 ACCCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTGA 127368 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 | || ||| | ||||||||| |||| || || | |||||| ||| | ||||||| Sbjct 127367 TATGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCAT 127308 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||| ||||| ||| ||||| |||| | || ||||| ||||||||| |||| Sbjct 127307 AAATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGAT 127248 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 | || || | || ||||| ||||| || || ||| | || || | || | || Sbjct 127247 GTGGCGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATCA 127188 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714 | ||||| || | | ||||| || ||||| | ||| ||||||| | ||||||| Sbjct 127187 AATTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGCA 127128 Query 48715 TTAACATATATTGAGGTCTTTC 48736 ||| || || ||||| | ||| Sbjct 127127 TTACCAAATGCTGAGGACGTTC 127106 >seq2041 Length=87568 Score = 158 bits (174), Expect = 1e-33 Identities = 574/892 (64%), Gaps = 7/892 (1%) Strand=Plus/Plus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||| || |||| |||||| ||||||| || |||||||||| | Sbjct 64587 TTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACG 64646 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| |||||||| | |||| ||| | || || | ||| | | | | | |||| Sbjct 64647 AAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATA-ATTTTTGGGCTTT 64705 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 | || || | | || | ||||| ||||||| |||||| || || Sbjct 64706 G--ATAGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCA 64763 Query 48138 CCATACACATTATCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || || ||| | || || |||||| | | ||| | | |||| ||| | ||| Sbjct 64764 CCGTA-ACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATT 64822 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | || || | |||| || | ||| || ||||| ||||| || ||||| || | Sbjct 64823 TTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGC 64882 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 | | ||| || || || ||| | ||| |||| ||| || | |||||||||||| Sbjct 64883 ACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATG 64942 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | || | || | |||| |||| ||||||||| || || || | ||| Sbjct 64943 CCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATA 65002 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | |||||| || || |||| | | ||| || | | ||| || || |||| || || Sbjct 65003 ACGGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGT 65062 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 || | ||| ||| ||| | | | || ||| || | ||| |||||||| || Sbjct 65063 ACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGC 65122 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 |||| || || | |||||| || | ||| || ||||| || || ||| || || Sbjct 65123 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 65182 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 |||| | | |||||| |||||||| || | ||| || | ||| || || Sbjct 65183 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAA 65242 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 |||||||| || ||| |||| |||| || | ||| ||||| ||||| | | ||| Sbjct 65243 CGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGC 65302 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || ||||| | || || |||| | || | ||| | | || ||| || | ||| Sbjct 65303 CTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTC 65362 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || || ||| | | | ||| || |||||| ||||||||||||||||| Sbjct 65363 GGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATA 65422 Query 48797 GTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTT 48847 |||| |||||| || | |||| | ||||| || || | | | ||||| Sbjct 65423 ACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTT 65473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562092021052320