Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178405.1_202017-04- 21] 759 sequences; 11,795,039 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq554 331 1e-85 seq2 199 5e-46 >seq554 Length=341995 Score = 331 bits (366), Expect = 1e-85 Identities = 1327/2074 (64%), Gaps = 49/2074 (2%) Strand=Plus/Plus Query 52804 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 52862 |||| || |||||||| | ||| ||||| | || || | | ||||||||| || || | Sbjct 62180 CAATAGTAAATTGAATTGCAGCAGATGCAGCTTGGGTTCTCAAATAGTACATACCGGTCT 62239 Query 52863 TTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTG 52922 | | || ||||||||||||||||||||||||||||||| | | || | Sbjct 62240 TCAATCCCTTCTTCCATCCGTAAAAATGCATACTTGTTAGTTTACCCATAGTTGGGGCAC 62299 Query 52923 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 52982 || | ||||| ||| ||| |||||| || || | | || || ||||| | Sbjct 62300 GTAAGAACAAATTCAAAGAATGAGATTGATCAATATAGACAGAACGATCGGCTGCCATGT 62359 Query 52983 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCT 53041 | ||||| |||||||||| ||||||||||| ||| || || || || | ||| |||| | Sbjct 62360 TAATGATAGTCTTTTGTGAAATTTCCCAAACAGTCTTGTATAAGTCCTTCAAT-TCTTGT 62418 Query 53042 GGAAGGTTTG-TATTC--TGAATAGATCCACCATCTACCATAATCCTATTCT---TGATC 53095 |||| |||| || | ||||| || ||| | | ||||| || || | || Sbjct 62419 GGAACATTTGGTAAGCCTTGAATGGAGCCATTTTGTG---TAATCAGATACTGTTTCATA 62475 Query 53096 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 53155 | |||| ||| | | || || | | || | | || || || || || Sbjct 62476 CCCTCATCCCAAATACCTAAATCAACCAAGTCACGCAGTAAGTAAGGGTTCACAACCTGG 62535 Query 53156 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 53215 ||||| || || || || | || | ||| ||||| || ||||| | | | ||| Sbjct 62536 AATTCACCGGATAAGACACGACGGGAGTACATATTGGAAGTGACTGGTTCGAAACATTCA 62595 Query 53216 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 53275 |||| ||||| ||||| | || |||||||| ||||| ||||||| || |||| Sbjct 62596 TTATAACCCAATATTTGGGATGTGGATGCAGTAGGCATTGGTGCCATGGTCAAGGAATTT 62655 Query 53276 CTAAGACCGTATGTTCTGATTTTATCTTTTAG--AGGT-TCCCAATTCCAAAGATCCGAC 53332 |||| ||| ||| | | || |||||||| |||| ||||||| ||| | | | Sbjct 62656 CTAATACC--ATGCT-TCATGATATCTTTTCTTAAGGTGTCCCAATCCCACATGCCGTAG 62712 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 53392 ||| ||||| ||||| | | || |||||| | Sbjct 62713 GGTTTTTGGTCCCACATATCAAACTGTAGTATACCTTGAGAAGCAGGAGATCCTTGGAAA 62772 Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452 || |||||||| || ||||||| ||||||||||||| || || | | | | |||| Sbjct 62773 GTTTCGTATGGACCGTCCTTCTGAGCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAA 62832 Query 53453 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 53512 || ||||| ||||| | ||||||| | |||||| ||||||||| || | Sbjct 62833 ATAGTTTCAAAGATTTGGATATTTAGTAAACGGGCTTCCTCAGAATCAAATGGCAAACGT 62892 Query 53513 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 53572 || || || || | ||| || | ||||||||||| | | | || |||||||||||| || Sbjct 62893 AACAGCATGAAAGTGTCAGCGAGACCTTGAACACCCAAAGCAATTGGTCTATGTCTCATA 62952 Query 53573 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 || || || |||||| || ||| || |||||| ||| || | | | || | || Sbjct 62953 TTGGATTTTCTCGCTTCTTCAACAGGGTAGTAATTACGATCAATGACTCTGTTTAAATTA 63012 Query 53633 CTGACAATTACTTTGACCACATCCT-TCAGTTTGAGAAAATCAAATTGTCCATCTATTAC 53691 | || ||||| | | || | | | ||| ||| | | ||| | | |||| Sbjct 63013 CGAGTAACAACTTTAGCAATTTCATGTAATTTTTTGAAGTTGTA--TGTGGAAGTCTTAC 63070 Query 53692 AAACATG------TTCAATG-------------CAATAGATGCCAGATTACAAACGGCTA 53732 | | | ||||||| ||| || |||| |||||||| || Sbjct 63071 CATCCTCAGAAGTTTCAATGAATGCTGGTAAGGCAACGGAAGCCAAGTTACAAACAGCAG 63130 Query 53733 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATTACTACACTTGATGGTT 53791 |||| | | | | |||| | || ||| ||| ||| || | |||||||| Sbjct 63131 TTTCATCTGGAGCTGAGTATTCAACAATTTCACAGCATAAGTTTGATG-ACTTGATGACA 63189 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTA 53851 ||||| |||| ||||||| ||| ||||||| |||||||| |||| || ||| || ||| Sbjct 63190 CCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGTGTA 63249 Query 53852 CCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGAT 53911 ||||||||| | || | ||| | ||| | | ||| | | || || || || Sbjct 63250 CCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATAATTTTTGGGCTTTGAT---AGTC 63306 Query 53912 TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACA 53971 || | |||| | ||||| | ||||| | ||||||||||| || || | Sbjct 63307 TTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAACAA 63366 Query 53972 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 54031 | | || |||||| | ||| | | || | ||| || | || | || Sbjct 63367 TCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACA 63426 Query 54032 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCC 54091 || ||||| || |||||||||||||| ||||| || | |||||| | | | |||| Sbjct 63427 CGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCC 63486 Query 54092 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151 || || || ||||| ||| ||| | || | | ||||||| |||||| |||||| Sbjct 63487 TCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATGCCATGGTTCC 63546 Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211 | ||| | || | | ||||| | ||| || || ||||| || | || | || ||| Sbjct 63547 AGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATAACGGGCAGTG 63606 Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271 ||||| |||| | | ||| ||||| | ||| || || | ||| || || || | || Sbjct 63607 TTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATG 63666 Query 54272 TAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAG 54331 || ||| | | |||||| ||| || |||||| || || || || |||| || Sbjct 63667 TAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAA 63726 Query 54332 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 54391 || || || ||| || || || || || || ||||| ||| || ||| ||||| | Sbjct 63727 ATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCA 63786 Query 54392 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 54451 | | ||||| |||||||| | ||| || ||||| || || || ||||| Sbjct 63787 ACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAG 63846 Query 54452 GCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC 54511 || || ||||| ||||| ||| | | || ||||| || | ||| | || ||||| Sbjct 63847 GCATGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGCCTCGATATCT 63906 Query 54512 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 | || || |||| |||||| | ||| | | || || || | ||| | | |||| Sbjct 63907 CTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTCGGCCA-CTTG 63965 Query 54572 -TTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TG 54629 ||| ||| | || || || || |||||||||||||||||||||||| |||| || Sbjct 63966 ACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATAACTGTACTG 64025 Query 54630 AAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 54689 |||| |||| || || | ||| | ||||| | ||||||||| | || | || | || Sbjct 64026 AAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCATGACAATAT 64084 Query 54690 CCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAA 54749 | | | || || || |||| | || ||| | || |||||| || || Sbjct 64085 TGTAGACATCATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTGACGTATCTAT 64144 Query 54750 ATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGG 54809 | | ||| | | || | | |||| ||||| | |||| ||| |||| ||| || | || Sbjct 64145 AAAGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAAATTAGAAATGG 64204 Query 54810 CTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 | ||||| || ||||| |||| ||||| ||||| Sbjct 64205 CAATTCTGGCCGCTAGGGTGGCGTAATCTGGATG 64238 >seq2 Length=614795 Score = 199 bits (220), Expect = 5e-46 Identities = 590/900 (66%), Gaps = 15/900 (2%) Strand=Plus/Plus Query 23824 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 23883 |||| |||||||| || |||||||| ||| || | |||||||| || ||||| | Sbjct 425677 CTTG-GACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCT 425735 Query 23884 TACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGA--TTCT 23941 |||| | || || || ||||||||||||||| | || || || || ||| |||| Sbjct 425736 TACCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCT 425795 Query 23942 TTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT 24001 | | | || || | | || ||| || ||||| ||||| | ||| ||||||| Sbjct 425796 TGTTA--CCGAAAGCGACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATCAA 425853 Query 24002 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT-TCTT-GTTCA 24059 ||| ||||| |||| | |||||| | || | ||||| | |||| ||||| Sbjct 425854 GTCAGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCA 425911 Query 24060 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAA 24119 || || || || || | ||| | || | || ||| | | ||| Sbjct 425912 ATTTCCACAGCCTCGGTGACAATTTTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAA 425971 Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || |||| ||| ||||| || ||| ||| | ||| |||||||||| || |||||| Sbjct 425972 TGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCG 426031 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| || | |||||||| | || | |||||| | ||| || ||||| ||||| Sbjct 426032 TTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAG 426091 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || || || || || | ||||| | | |||||||||| |||||||| ||| | | Sbjct 426092 GAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAG 426151 Query 24300 GCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 ||| ||| || ||||| || |||||| |||||||||| | || || Sbjct 426152 GCGTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATG 426211 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || | || ||||| || | | | |||| ||| || || | || ||||| ||| Sbjct 426212 GTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAGGTATCGATC 426271 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 || | || |||| || ||||| |||||||| ||||| || |||||||||| Sbjct 426272 AACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTC 426331 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | ||||| | ||| || ||||| | | || ||| | || |||||||| || || Sbjct 426332 TTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATA 426391 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT-- 24593 |||||| || || ||||| || | || || ||| || | ||| ||| || Sbjct 426392 CCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTCTCGTTC 426451 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 || || ||||| |||| |||||| ||||| | ||| | |||||| | ||||| || Sbjct 426452 ATTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAA 426511 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 24713 || || || || || || | |||||| ||||| || | || || |||| |||| Sbjct 426512 GAAGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACA 426571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715967066320