Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178425.1_202017-04- 24] 2,430 sequences; 12,162,484 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq829 140 3e-28 seq8 100 2e-16 seq1 93.3 3e-14 >seq829 Length=2319 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||||||| ||||||| || || || ||| | || || || | Sbjct 1798 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 1857 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || ||| |||||| ||||||||||| | || |||||| Sbjct 1858 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 1917 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| ||| ||||| || || || || | | ||| || | ||||||||| Sbjct 1918 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 1977 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| ||||| | ||| |||||||||||||| |||| || Sbjct 1978 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 2024 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||||||| ||||||| || || || ||| | || || || | Sbjct 2026 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 2085 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || ||| || ||| || || ||||| | || ||||| Sbjct 2086 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 2145 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| ||||| || ||||| |||| | ||| || | || || ||| Sbjct 2146 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 2205 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||||||||| |||||||||||||| |||| || Sbjct 2206 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 2252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| ||||| | || | ||| ||||| ||||| || |||| | ||| || | ||| Sbjct 1684 GATCAACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGAC 1743 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| |||||||| ||||| | ||| |||||||||||||| |||| || Sbjct 1744 TACAACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 1796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| ||||| || || |||||||| || | ||| || || | Sbjct 1342 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 1401 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || || ||| || || ||||| | || ||||| Sbjct 1402 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 1461 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| ||||| ||||| || |||| | ||| || | || |||||| Sbjct 1462 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 1521 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| |||||||| || || || Sbjct 1522 ATTCAGAAGGAGTCCACCTTACA 1544 >seq8 Length=155921 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| ||||| |||||||| || || || |||||| | ||| || || Sbjct 147376 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 147317 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || ||| | | | | || || ||||| || || ||||| | || || Sbjct 147316 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 147257 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || ||| | || | ||| ||||| || |||| || | | ||| || | |||||| Sbjct 147256 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 147197 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| ||||| | ||| |||| ||||||||| |||| || Sbjct 147196 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 147147 >seq1 Length=236762 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 107564 TTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGT 107623 ||||||||| ||||| || || || ||||| || | ||| || || || ||| | Sbjct 233209 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 233150 Query 107624 CGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACT 107683 | | | || || ||||||| || || ||||| | || || || || ||| | Sbjct 233149 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 233090 Query 107684 TATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAA 107743 || | ||| ||||| || |||| |||| | ||| || | ||||||||||||||||| Sbjct 233089 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAA 233030 Query 107744 GGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || |||||| | || ||||||||| |||| || Sbjct 233029 AGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 232991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864987014270