Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178435.1_202017-04- 21] 2,718 sequences; 12,067,109 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1645 120 2e-22 seq4 100 2e-16 >seq1645 Length=34994 Score = 120 bits (132), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | |||||| |||||||| || | ||| |||||||| | ||||| || ||| Sbjct 11786 CCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 11845 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || || | ||| || || ||||||||||||| ||||||||| | || Sbjct 11846 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 11905 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||||||| || ||| | ||| |||||| || ||| |||||| || || | Sbjct 11906 ATACCTTCTTTATC-TTGAATTTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAA 11963 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| |||||||| || || || || || || || ||||||||||| Sbjct 11964 CCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 12012 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 || |||| ||| | ||| | ||| ||||||||| | ||||| || ||||| || | Sbjct 12707 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTA 12766 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 |||| || | || || |||||||| ||||||| ||||||||| | || | ||||||| Sbjct 12767 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTCTGTTGATCCGGAGGGATACCTTCT 12826 Query 43012 TTTTCGCTGA----TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTAC 43067 || || ||| || ||| | || || ||| |||||| || || || |||| Sbjct 12827 TTATCT-TGAATTTTCGACT---TAACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAG 12882 Query 43068 CGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||| || || ||||||||||| || ||||||||||| Sbjct 12883 GGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 12924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| ||||||||||| | || ||| || || | || ||||| ||| Sbjct 12014 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 12073 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || |||||||||||||||| |||||||| | || Sbjct 12074 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGG 12133 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| | || || | | | |||||| | || || Sbjct 12134 ATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACC 12193 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| ||||| | ||| || ||||| || ||||| Sbjct 12194 TCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 12240 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| |||||||| || | ||| |||||||| | ||||| || ||| Sbjct 12470 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 12529 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || | || || |||||||| ||||||| |||||||| | || Sbjct 12530 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 12589 Query 43003 ACACCTTCTTTTTCGCTGA----TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 | |||||| || || ||| || ||| | || || | | ||||| || || Sbjct 12590 ATACCTTCCTTGTCT-TGAATTTTCGACT---TAACGTTGTCGATAGTGTCAGAAGATTC 12645 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| |||||||| || || || || || || || ||||||||||| Sbjct 12646 AACCTCTAGGGTTATAGTCTTACCCGTCAGTGTCTTGACGAAAATTTGCAT 12696 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | |||||| || |||| || | | || || | ||| || || Sbjct 11587 AGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACC 11646 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA----TCAACT 43027 |||||||||||||| || || || | || | |||||| || || ||| || || Sbjct 11647 GGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGAC- 11704 Query 43028 CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTA 43087 || || || ||| ||||| || || || |||| |||||||| || || || | Sbjct 11705 --TTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCA 11762 Query 43088 GAGTTTTCACAAAAATTTGCAT 43109 | || || |||||||||||||| Sbjct 11763 GTGTCTTGACAAAAATTTGCAT 11784 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 || |||| ||| | ||| | ||| |||||| || | |||||||| |||| || | Sbjct 12251 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTA 12310 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 |||| || | || || |||||||| ||||||| |||||||| | || | |||||| Sbjct 12311 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCC 12370 Query 43012 TTTTCGCTGA----TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTAC 43067 || || ||| || ||| | || || | | ||||| || || || |||| Sbjct 12371 TTGTCT-TGAATTTTCGACT---TAACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAG 12426 Query 43068 CGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||| || || || || || || |||||||||||||| Sbjct 12427 GGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 12468 >seq4 Length=186342 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| |||||||| | ||||| |||||| Sbjct 8913 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8854 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 8853 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8794 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 8793 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 8734 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 8733 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381356966893644