Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178435.1_202017-04- 21] 2,718 sequences; 12,067,109 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1645 109 5e-19 seq27 84.2 2e-11 seq73 82.4 8e-11 >seq1645 Length=34994 Score = 109 bits (120), Expect = 5e-19 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||||| | | ||||||||||| ||||||||||| || || | ||| || || || Sbjct 12721 ATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTG 12780 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 ||||||| | |||| | | |||||| |||||||| ||||||||||| || ||| ||| Sbjct 12781 CTTACCGGCAAAGATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATC-TTGAATTT 12839 Query 138531 TTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 | | |||| ||| || | ||||||| || || ||||| | || | || || || Sbjct 12840 TCGACTTAACGTTG-TCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCT 12898 Query 138589 GTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||||||| || ||||| ||||| Sbjct 12899 GTTAGAGTTTTGACGAAAATTTGCAT 12924 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || ||||| | | ||||| || |||||||||||||| | Sbjct 12926 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCAGAC 12985 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || || ||||| ||||||| | |||| | | |||||| || ||||| Sbjct 12986 AAGGTTCTACCATCTTCCAGTTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 13045 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| |||||| || | | || | ||||||| || || ||| Sbjct 13046 ATACCCTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACC 13105 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| ||| || ||||| |||||||| Sbjct 13106 TCTAAAGTGATGGTTTTACCAGTCAAAGTCTTAACAAAGATCTGCAT 13152 Score = 105 bits (116), Expect = 7e-18 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||||| | | |||||||||||||||||||| || || || | ||| || || || Sbjct 13177 ATGTAAGGTGGACTCCTTTTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTG 13236 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 ||||||| | |||| | | ||||| || ||||| |||||||| ||||| ||| ||| Sbjct 13237 CTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTC-TTGAATTT 13295 Query 138531 TTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 | | |||| ||| || | ||| |||| || || || || | || | |||||||| Sbjct 13296 TCGACTTAACGTTG-TCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCG 13354 Query 138589 GTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| || || ||||||||||| Sbjct 13355 GTCAAAGTCTTGACGAAAATCTGCAT 13380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||||| | | |||||||| ||||||||||| || || || | ||| || || || Sbjct 12265 ATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTG 12324 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 ||||||| | |||| | | ||||| || ||||| |||||||| ||||| ||| ||| Sbjct 12325 CTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTC-TTGAATTT 12383 Query 138531 TTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 | | |||| ||| || | ||||| | || || ||||| | || | || ||||| Sbjct 12384 TCGACTTAACGTTG-TCGATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCT 12442 Query 138589 GTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || || |||||||| ||||| Sbjct 12443 GTCAGTGTCTTGACAAAAATTTGCAT 12468 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | ||| || || || | | || |||||||| ||||||||||| | Sbjct 11786 CCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 11845 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || || ||||| ||||| | | | || | | |||||| |||||||| Sbjct 11846 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 11905 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||||||||| || ||| |||| |||| | ||| || | ||||||| || || | Sbjct 11906 ATACCTTCTTTATC-TTGAATTTTACTTTTGACGTTG-TCAATAGTGTCGGAAGATTCAA 11963 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| ||||| || || || ||||| ||||| Sbjct 11964 CCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 12012 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || |||||||| ||||||||||| | Sbjct 12470 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 12529 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || || ||||||| | |||| | | ||||| || ||||| Sbjct 12530 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 12589 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| | |||| ||| || | ||||| | || || | Sbjct 12590 ATACCTTCCTTGTC-TTGAATTTTCGACTTAACGTTG-TCGATAGTGTCAGAAGATTCAA 12647 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| ||||| || || || ||||| ||||| Sbjct 12648 CCTCTAGGGTTATAGTCTTACCCGTCAGTGTCTTGACGAAAATTTGCAT 12696 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || || | || || ||||| ||||||| | Sbjct 11591 GACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCA 11650 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | | || ||||| ||||| |||||||| ||||| ||| |||| | |||| Sbjct 11651 AAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGACTTAAC 11709 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | || || ||||| | || | || ||||| ||||| || | Sbjct 11710 GTTG-TCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCT 11768 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 11769 TGACAAAAATTTGCAT 11784 >seq27 Length=53572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 312/484 (64%), Gaps = 14/484 (3%) Strand=Plus/Minus Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 ||||| || |||| |||| || || ||||| | || | ||||| ||||| ||| Sbjct 2225 GGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGTTGGCATTGGTGCC 2166 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | |||||| || | || || || |||||| | | || | | ||||||| Sbjct 2165 ATAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAAGGTTTCCCAATCC 2106 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGT--AACACTCCTCGACTGGCGG 153264 |||| | | ||| | ||||||||||| ||| | ||| || || | | || || | Sbjct 2105 CACATGCCAAATGGTTTAGCGTTCCACATATCGAATTGTAAAATACCCTTGGA--AGCTG 2048 Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGA 153324 || || |||| ||| || | || || |||||||| ||| ||| || || | Sbjct 2047 GAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCCAATTCACAGGAGGCTTCAA 1988 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | | ||| ||| || |||||| ||||||||| || ||| |||||||| | Sbjct 1987 GAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGAGTTTGAGCTTCTTCTGATT 1928 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 | | || | |||| || || | | | ||||||| |||||||| ||| | | || | Sbjct 1927 CAAAGGGTAGACGCAACATCATATAAGTATCGGCCAAACCCTGGACACCAAGAGCAATAG 1868 Query 153445 GTCGATGCTTC-TCGTTG--CTGC--GCCTCGCGCTCGCTATGGGATAGTGATTGCGATC 153499 ||| ||||||| | ||| | | |||||| | | ||||||| ||| || || Sbjct 1867 GTCTATGCTTCATATTTGAATTTCTAGCCTCG-----GGAACTGGATAGTAATTACGGTC 1813 Query 153500 GATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATC 153559 ||||| | |||| | |||| | | ||||||| ||| | | | | ||||||||| Sbjct 1812 GATAACTCTGTTCAAGTTGTGGGTAATGACTTTAGCAATCTCGTGTAATCTCTCGAAATT 1753 Query 153560 ATAG 153563 |||| Sbjct 1752 ATAG 1749 >seq73 Length=19048 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| ||||| || | | || || ||||||||||||||||| | Sbjct 12091 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 12032 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | ||| ||||| | | |||| | | |||||||| || || Sbjct 12031 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 11972 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | |||| || |||| || | ||||| | || || | Sbjct 11971 ATACCTTCCTTGTC-TTGAATCTTTGACTTGACATTG-TCAATAGTGTCAGAAGATTCAA 11914 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | || | || | || |||||||||| ||| || |||||| Sbjct 11913 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 11873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496245539484960