Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178435.1_202017-04- 21] 2,718 sequences; 12,067,109 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1645 127 5e-24 seq73 105 2e-17 seq1561 100 7e-16 seq1683 98.7 2e-15 seq4 86.0 1e-11 >seq1645 Length=34994 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || ||||| || | || ||||||||||||| ||||||||||| ||| || || Sbjct 12707 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTA 12766 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| |||||||| ||||| ||||| | | ||| || |||||| || |||||| Sbjct 12767 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTCTGTTGATCCGGAGGGATACCTTCT 12826 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| || ||| ||| || | ||||| | | ||| || || | || Sbjct 12827 TTATCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTT 12886 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || |||||||| || |||||||| Sbjct 12887 ATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTG 12921 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 |||| ||||||||| ||||| ||||||||||| | |||||||| | || || || ||| Sbjct 11570 CTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCA 11629 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||| || ||||| ||||| || || | | |||||||| ||| ||| ||||| Sbjct 11630 TCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTG 11689 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || ||||| || ||| ||| || | ||||| | | ||| || || | || || Sbjct 11690 TCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATA 11749 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || || ||||||||||| Sbjct 11750 GTCTTACCTGTCAGTGTCTTGACAAAAATTTG 11781 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| || |||||||||| ||||||||||| ||| || || || Sbjct 12481 TCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACC 12540 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| |||||||| ||||| ||||| | | || || || ||| || ||||| Sbjct 12541 GTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTT 12600 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| ||| |||| ||||| | | ||| || || | || || Sbjct 12601 GTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAGGGTTAT 12660 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || |||||||| Sbjct 12661 AGTCTTACCCGTCAGTGTCTTGACGAAAATTTG 12693 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| || | ||| ||||| || |||||||||| ||||||||||| ||| || || Sbjct 11795 AGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTA 11854 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| || ||||| || || || || | | ||| || |||||| || |||||| Sbjct 11855 CCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCT 11914 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| || || ||| || | ||||| | | ||| || || | || Sbjct 11915 TTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTT 11974 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || |||||||| Sbjct 11975 ATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTG 12009 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || ||||| || | || |||||||| || | |||||| |||| || || || Sbjct 12251 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTA 12310 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| |||||||| ||||| ||||| | | || || || ||| ||| ||||| Sbjct 12311 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCC 12370 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| || ||| ||| |||| ||||| | | ||| || || | || Sbjct 12371 TTGTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAGGGTT 12430 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || ||||||||||| Sbjct 12431 ATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTG 12465 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || ||||| || | || ||||||||||| | |||||| |||| || || || Sbjct 13163 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTTTGAATGTTGTAATCAGACAGCGTTCTA 13222 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| |||||||| ||||| ||||| | | || || || ||| || ||||| Sbjct 13223 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCC 13282 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| || ||| ||| |||| ||| || | | ||| || ||||| || Sbjct 13283 TTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTT 13342 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || | ||| || || ||||| || Sbjct 13343 ATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTG 13377 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| || || | ||||||||||| ||| || || ||||||||||| ||||| ||| Sbjct 12956 GTAGACTCTTTCTGAATGTTGTAGTCAGACAAGGTTCTACCATCTTCCAGTTGCTTACCG 13015 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | | ||| || || ||| || || || ||||| || || ||| Sbjct 13016 GCAAAGATCAACCTCTGTTGATCTGGAGGGATACCCTCCTTGTCCTGGATTTTCGACTTA 13075 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| ||||| | | ||| || || || ||||| || ||||| || | ||| Sbjct 13076 ACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCAGTCAAAGTC 13135 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 13136 TTAACAAAGATCTG 13149 >seq73 Length=19048 Score = 105 bits (116), Expect = 2e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| | ||| || || ||||| | ||||||||||| ||| || || || Sbjct 12080 TCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 12021 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| ||||| || || ||||| | | || ||||| || || ||||| Sbjct 12020 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 11961 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||||||| ||| || || | ||||| | | ||| || ||||| ||||| Sbjct 11960 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 11901 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAA 199621 |||||||| || | ||| || |||||| Sbjct 11900 GGTCTTACCAGTCAAAGTCTTGACAAAA 11873 >seq1561 Length=292 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 |||| ||| ||||| ||||| ||||||||||| | |||||||| | || || || ||| Sbjct 105 CTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCA 164 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 |||||||| || || || ||||| || | | |||||||| ||| ||| ||||| Sbjct 165 TCTTCCAGTTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTG 224 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || ||||| || ||| ||| |||| ||||| | | ||| || || | || || Sbjct 225 TCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAGGGTTATA 284 Query 199595 GTCTTACC 199602 |||||||| Sbjct 285 GTCTTACC 292 >seq1683 Length=17286 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | || | ||| || |||||||||| ||||||||||| | ||| || || Sbjct 8577 TCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAGAGTTCTACC 8518 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| ||||| || || ||||| | | || ||||| || || ||||| Sbjct 8517 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 8458 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| || | || | |||||| | | ||| || ||||| ||||| Sbjct 8457 GTCTTGGATCTTGGACTTGACAGTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGAT 8398 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAA 199620 |||||||| || | ||| || || || Sbjct 8397 GGTCTTACCAGTCAAAGTCTTAACGAA 8371 >seq4 Length=186342 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | ||||| || || ||||| ||||||||||| || |||||| |||| |||||| Sbjct 8808 AAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAACA 8867 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 201024 |||| || || |||||||| ||| | || |||||| Sbjct 8868 TCCAAAAGGAATCTACTCTACACTTGGTCTTGAGA 8902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178880544792106