Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178435.1_202017-04- 21] 2,718 sequences; 12,067,109 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1645 113 3e-20 seq73 91.5 1e-13 >seq1645 Length=34994 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||||| | ||| | ||||| ||| ||| |||||||| ||||||||||| Sbjct 13154 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTTTGAATGTTGTAATCAGAC 13213 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | |||| || | ||||||||||||||| |||| || |||||||| | || Sbjct 13214 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 13273 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || || || | | | || || | || || Sbjct 13274 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 13333 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || |||||||| || || ||||||||||| Sbjct 13334 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 13380 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| | ||| |||||| ||||| || |||||||| || ||| | |||| Sbjct 12028 CAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTC 12087 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||||||||||| |||| || |||||||| | || | || |||||||| Sbjct 12088 TTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTC 12147 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || || || | | | | || || | || ||||| | || || || Sbjct 12148 CTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGT 12207 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || |||||||| || ||||| |||||||| Sbjct 12208 TTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 12240 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| | ||| |||||| ||||| ||||| ||||| | ||| | | || Sbjct 12940 CAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCAGACAAGGTTCTACCATC 12999 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||||||||||| |||| | ||||||||| | || | ||||||||||| Sbjct 13000 TTCCAGTTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCCTCCTTGTC 13059 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || || || | | | | || || | || ||||| | || || || Sbjct 13060 CTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGT 13119 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || |||||||| || ||||| |||||||| Sbjct 13120 TTTACCAGTCAAAGTCTTAACAAAGATCTGCAT 13152 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||||| | ||| | ||||| ||| ||| || ||||| ||||||||||| Sbjct 12242 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 12301 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | |||| || | ||||||||||||||| |||| || |||||||| | ||| Sbjct 12302 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 12361 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || || || | | || || || | || ||| Sbjct 12362 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAACC 12421 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || |||| || || |||||||| ||||| Sbjct 12422 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 12468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||||| | ||| | ||||| ||| ||| ||||| || ||||| ||||| Sbjct 12698 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 12757 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | |||| || | ||||||||||||||| |||| || ||||||||||| || Sbjct 12758 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTCTGTTGATCCGGAGGG 12817 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || ||| || || || | | || || || | || ||| Sbjct 12818 ATACCTTCTTTATCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCGGAAGATTCAACC 12877 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | |||||| || ||||| ||||| Sbjct 12878 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 12924 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||||||||| || || || || ||||| || ||||| ||||| | ||| | |||| Sbjct 12484 CAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTC 12543 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||||||||||||||| |||| || |||||||| | || | || |||||||| Sbjct 12544 TTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTC 12603 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || || || | | || || || | || ||||| | || || || Sbjct 12604 TTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGT 12663 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||| || || || ||||| ||||| Sbjct 12664 CTTACCCGTCAGTGTCTTGACGAAAATTTGCAT 12696 >seq73 Length=19048 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| ||||| ||||| | ||| | |||| ||||| |||||||| ||||| Sbjct 12055 TCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAG 11996 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||| || | || | || |||||||| ||||||| || ||| Sbjct 11995 ATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTG 11936 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || |||| || || || || || |||||||| || ||| Sbjct 11935 TCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACA 11876 Query 48756 AAA 48758 ||| Sbjct 11875 AAA 11873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380924981203914