Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178435.1_202017-04- 21] 2,718 sequences; 12,067,109 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq313 123 1e-23 seq27 95.1 6e-15 >seq313 Length=23305 Score = 123 bits (136), Expect = 1e-23 Identities = 311/473 (66%), Gaps = 0/473 (0%) Strand=Plus/Plus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||| ||||||| ||| |||||| || || || ||| || | ||| |||| Sbjct 12383 TTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAGATCAGGAA 12442 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | ||| || |||||||| || | ||||| ||||| ||||| ||||| | | Sbjct 12443 TCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTTCTTCCTAA 12502 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 ||| | |||||||| ||||| | ||||||||||| | || | ||||| ||| Sbjct 12503 TATCAATAAAATCAAAGATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAACGCACCAG 12562 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 |||||| ||||| || || || || | ||||| | ||||||||| | ||| | Sbjct 12563 GTCTTTTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAACACGAATCATAG 12622 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 ||| ||| || | ||| |||||||| | | ||| | || || || || | ||| | Sbjct 12623 GAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGT 12682 Query 26190 CGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTG 26249 || ||| | ||| || |||||||| ||| ||||| ||||| || | | Sbjct 12683 TATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGG 12742 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 | ||| |||| || | || || | ||||| | | || |||||||| || | || Sbjct 12743 TGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGACATTT 12802 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | || || | ||| || || || || | || |||||| ||||| Sbjct 12803 GAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATAT 12855 Score = 84.2 bits (92), Expect = 1e-11 Identities = 316/492 (64%), Gaps = 14/492 (3%) Strand=Plus/Plus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 ||||| | ||| ||||| || || |||||| ||||||||| |||||||||||||| | Sbjct 11209 GTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAAAAATGCATACTT 11268 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGG-CAA-- 24811 |||||||| | || ||| | ||| || || |||| || |||| ||| ||| Sbjct 11269 GTTAGTTTACCCATAGTTGGGGCACGTAAGAATAAATTCAAAGAATGAGATTGATCAATA 11328 Query 24812 ---ACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAA 24868 ||| |||| ||| || || | || |||||| || || || || || || Sbjct 11329 TAGACAGAACG------ATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATTTCCCAA 11382 Query 24869 GCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCA 24928 | || |||||| || || | || ||||| | ||| | ||||| || ||| Sbjct 11383 ACAGTCTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAGCCTTGAATGGAGCCA 11442 Query 24929 TTTTCTCTCAATAGATTCAATCTCATATTCGGTGTCCAAAGAT-TAATTTTTTCAAGATC 24987 |||| | | | |||| | | ||||| | ||||| | ||| | |||| || Sbjct 11443 TTTTGTGTAATCAGATACTGTTTCATACCCTCATCCCAAATACCTAAATCAACCAAG-TC 11501 Query 24988 TCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA 25047 | | |||| || | | ||||| || || || || | | | | Sbjct 11502 ACGCAGTAAGTAAGGGTTCACAACCTGGAATTCACCGGATAAGACACGACGGGAGTACAT 11561 Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 || ||||||| |||||| ||||||||||||| || || ||||| || || ||||| || Sbjct 11562 ATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGTGGATGCAGT 11621 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 |||||| ||| || | |||||||| | ||||| || | || |||| | |||| Sbjct 11622 AGGCATTGGTGCCATGGTCAAGGAATTTCTAATACCATGCTTCATGATATCTTTTCTTAA 11681 Query 25168 TTTATCCCAATC 25179 | |||||||| Sbjct 11682 GGTGTCCCAATC 11693 >seq27 Length=53572 Score = 95.1 bits (104), Expect = 6e-15 Identities = 214/315 (68%), Gaps = 10/315 (3%) Strand=Plus/Minus Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 |||||| || | |||||| ||||||||||||| || | ||||| ||||| || || || Sbjct 2238 GTTTGAGGTCACTGGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGT 2179 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||||||| ||| || | || ||||| || |||| ||||||||| || | | |||| Sbjct 2178 TGGCATTGGTGCCATAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAA 2119 Query 25168 TTTATCCCAATCTAAATTATTATCTAACTCG-ATATCGTTATCATATAAATCAAATTGTA 25226 | |||||||| | | | || | | || |||| || || ||| ||||||| Sbjct 2118 GGTTTCCCAATCCCACAT----GCCAAATGGTTTAGCGTT-CCACAT--ATCGAATTGTA 2066 Query 25227 ACAATCCACTT-GCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCC 25285 | ||| | ||| | || || || |||||||| ||||||||||||| | || ||| Sbjct 2065 A-AATACCCTTGGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCC 2007 Query 25286 ATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAA 25345 | || || || | | ||||| || ||| |||| || || |||||||| | Sbjct 2006 AATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGA 1947 Query 25346 AACTTAGCTTTTTCT 25360 | ||||| |||| Sbjct 1946 GTTTGAGCTTCTTCT 1932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253031617891850