Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178435.1_202017-04- 21] 2,718 sequences; 12,067,109 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1645 107 2e-18 >seq1645 Length=34994 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | ||| | || ||| ||||| | ||| ||||||||||||||| || || || Sbjct 12242 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 12301 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || |||||||| ||||| || |||| | ||||| || | ||| Sbjct 12302 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 12361 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| |||| | | |||| | | | |||||| || || || Sbjct 12362 ATACCTTCCTTGT-CTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAAC 12420 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 12421 CTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 12468 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||||| ||| ||| ||||||||||| ||||| || | ||| | | || Sbjct 12941 AACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCAGACAAGGTTCTACCATCT 13000 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || || ||||| ||||| || |||| | |||||| || | || | | |||||||||| Sbjct 13001 TCCAGTTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCCTCCTTGTCC 13060 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 |||||| ||| |||| | | |||||| || || ||||| | || || || Sbjct 13061 TGGATTTTCGACTT-AACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGT 13119 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| |||| ||||| || || |||||||| Sbjct 13120 TTTACCAGTCAAAGTCTTAACAAAGATCTGCAT 13152 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | ||| | || ||| ||||| | ||| |||||| |||||||| || || || Sbjct 13154 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTTTGAATGTTGTAATCAGAC 13213 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || |||||||| ||||| || |||| | ||||| || | || Sbjct 13214 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 13273 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| ||| |||| | | |||| | | | || ||| || || || Sbjct 13274 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAAC 13332 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| |||||||| |||| ||||| |||||||||||||| Sbjct 13333 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 13380 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||||| ||| ||| |||||||||||||| || || || || | |||| Sbjct 12029 AACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCT 12088 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || || ||||| ||||| || |||| | ||||| || | || | | ||||||||| Sbjct 12089 TCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCC 12148 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 |||||| ||| |||| | | |||||| || || ||||| | || || || Sbjct 12149 TGGATTTTCGACTT-AACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGT 12207 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| |||| ||||| || || |||||||| Sbjct 12208 TTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 12240 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| || || || ||||| || ||||| ||||| || | ||| | |||| Sbjct 12485 AACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCT 12544 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| ||||| || |||| | ||||| || | || | | |||||||| Sbjct 12545 TCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCT 12604 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| | | |||| | | | |||||| || || ||||| | ||||| || Sbjct 12605 -TGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGT 12663 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||||| ||||| |||||||| ||||| Sbjct 12664 CTTACCCGTCAGTGTCTTGACGAAAATTTGCAT 12696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288293221600