Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178455.1_202017-04-
22] 3,297 sequences; 12,571,070 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq191 140 2e-28
seq574 125 5e-24
seq6 105 4e-18
seq302 104 2e-17
seq28 93.3 3e-14
>seq191
Length=882
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 603 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 544
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 543 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 509
>seq574
Length=33616
Score = 125 bits (138), Expect = 5e-24
Identities = 168/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||| | | | ||| | ||| | ||| |||||| ||||| ||||||||||
Sbjct 210 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 269
Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
||| |||| |||| |||| || || |||||||| || | | |||||||||
Sbjct 270 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 325
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| |||| ||||| ||||| |||||| ||| || || | || ||||| | |
Sbjct 326 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 385
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||| ||||| || |||||||| ||||| || || ||||| ||||||||
Sbjct 386 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 438
>seq6
Length=259691
Score = 105 bits (116), Expect = 4e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || ||
Sbjct 8676 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 8617
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| | | || || ||||| || || ||||| || | | |||||| || | ||
Sbjct 8616 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8557
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| || || ||| ||||| | | ||| || | ||||||
Sbjct 8556 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8497
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| | |||||||| ||||| || || || || ||||| || ||||| ||
Sbjct 8496 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8446
>seq302
Length=520
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 383 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 442
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 443 GCCAATATTTAGCTTTA 459
>seq28
Length=31490
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/207 (70%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTT----CGTCGTCTAA 38170
||||||||| |||||||||||||||||| || |||| |||| | || ||||
Sbjct 281 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACA----GCGTTCTACCATCTTCTAG 226
Query 38171 TTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAAT 38230
||| || |||||||| || | | ||| || || | || | ||||| ||||| |||
Sbjct 225 TTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAAT 166
Query 38231 TTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACC 38290
||| ||| || || | | ||| || | |||||| |||| || ||||| |||||
Sbjct 165 TTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACC 106
Query 38291 CGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || ||||| || |||||
Sbjct 105 TGTCAGTGTCTTGACGAAAATTTGCAT 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334933741088807
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |