Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178455.1_202017-04- 22] 3,297 sequences; 12,571,070 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq191 140 2e-28 seq574 125 5e-24 seq6 105 4e-18 seq302 104 2e-17 seq28 93.3 3e-14 >seq191 Length=882 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 603 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 544 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 543 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 509 >seq574 Length=33616 Score = 125 bits (138), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | | ||| | ||| | ||| |||||| ||||| |||||||||| Sbjct 210 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 269 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| |||| || || |||||||| || | | ||||||||| Sbjct 270 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 325 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||| ||||| |||||| ||| || || | || ||||| | | Sbjct 326 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 385 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || |||||||| ||||| || || ||||| |||||||| Sbjct 386 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 438 >seq6 Length=259691 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || || Sbjct 8676 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 8617 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | | || || ||||| || || ||||| || | | |||||| || | || Sbjct 8616 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8557 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||| | | ||| || | |||||| Sbjct 8556 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8497 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | |||||||| ||||| || || || || ||||| || ||||| || Sbjct 8496 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8446 >seq302 Length=520 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 383 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 442 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 443 GCCAATATTTAGCTTTA 459 >seq28 Length=31490 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTT----CGTCGTCTAA 38170 ||||||||| |||||||||||||||||| || |||| |||| | || |||| Sbjct 281 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACA----GCGTTCTACCATCTTCTAG 226 Query 38171 TTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAAT 38230 ||| || |||||||| || | | ||| || || | || | ||||| ||||| ||| Sbjct 225 TTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAAT 166 Query 38231 TTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACC 38290 ||| ||| || || | | ||| || | |||||| |||| || ||||| ||||| Sbjct 165 TTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACC 106 Query 38291 CGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || ||||| || ||||| Sbjct 105 TGTCAGTGTCTTGACGAAAATTTGCAT 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334933741088807