Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178455.1_202017-04- 22] 3,297 sequences; 12,571,070 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq841 351 1e-91 seq1 187 3e-42 >seq841 Length=126892 Score = 351 bits (388), Expect = 1e-91 Identities = 1333/2072 (64%), Gaps = 45/2072 (2%) Strand=Plus/Plus Query 61846 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 61904 |||| || |||||||| | ||| ||||| | || || | | ||||||||| || || | Sbjct 65088 CAATAGTAAATTGAATTGCAGCAGATGCAGCTTGGGTTCTCAAATAGTACATACCGGTCT 65147 Query 61905 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 61964 | | || |||||||||||||||||||||| |||||||| | | || | Sbjct 65148 TCAATCCCTTCTTCCATCCGTAAAAATGCATACTTGTTAGTTTACCCATAGTTGGGGCAC 65207 Query 61965 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 62024 || | ||||| ||| ||| |||||| || || | | || || ||||| | Sbjct 65208 GTAAGAACAAATTCAAAGAATGAGATTGATCAATATAGACAGAACGATCGGCTGCCATGT 65267 Query 62025 TTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCT 62083 | || || |||||||||| ||||||||||| ||| || || || || | ||| |||| | Sbjct 65268 TAATGATAGTCTTTTGTGAAATTTCCCAAACAGTCTTGTATAAGTCCTTCAAT-TCTTGT 65326 Query 62084 GGAAGGTTTG-TATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCT---TGATC 62137 |||| ||||| || | |||||||| ||| | || ||||| || || | || Sbjct 65327 GGAACGTTTGGTAAGCCTTGAATGGAGCCATTTTGTG---TAATCAGATACTGTTTCATA 65383 Query 62138 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 62197 | |||| ||| | | || || | | || | | || || || || || Sbjct 65384 CCCTCATCCCAAATACCTAAATCAACCAAGTCACGCAGTAAGTAAGGGTTCACAACCTGG 65443 Query 62198 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 62257 ||||| || || || || | || | ||| ||||| || ||||| | | | ||| Sbjct 65444 AATTCACCGGATAAGACACGACGGGAGTACATATTGGAAGTGACTGGTTCGAAACATTCA 65503 Query 62258 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62317 |||| ||||| ||||| | || |||||||| ||||| ||||||| || |||| Sbjct 65504 TTATAACCCAATATTTGGGATGTGGATGCAGTAGGCATTGGTGCCATGGTCAAGGAATTT 65563 Query 62318 CTAAGACCGTATGTTCTGATTTTATCTTTTAG--AGGT-TCCCAATTCCAAAGATCCGAC 62374 |||| ||| ||| | | || |||||||| |||| ||||||| ||| | | | Sbjct 65564 CTAATACC--ATGCT-TCATGATATCTTTTCTTAAGGTGTCCCAATCCCACATGCCGTAG 65620 Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 62434 ||| ||||| ||||| | | || |||||| | Sbjct 65621 GGTTTTTGGTCCCACATATCAAACTGTAGTATACCTTGAGAAGCAGGAGATCCTTGGAAA 65680 Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494 || |||||||| || ||||||| ||||||||||||| || || | | | | |||| Sbjct 65681 GTTTCGTATGGACCGTCCTTCTGAGCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAA 65740 Query 62495 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTT 62554 || ||||| ||||| | ||||||| | |||||| ||||||||| || | Sbjct 65741 ATAGTTTCAAAGATTTGGATATTTAGCAAACGGGCTTCCTCAGAATCAAATGGCAAACGT 65800 Query 62555 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614 || || || || | ||| || | ||||||||||| | | | || |||||||||||| || Sbjct 65801 AACAGCATGAAAGTGTCAGCGAGACCTTGAACACCCAAAGCAATTGGTCTATGTCTCATA 65860 Query 62615 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 || || || |||||| || ||| || |||||| ||| || | | | || | ||| Sbjct 65861 TTGGATTTTCTCGCTTCTTCAACAGGGTAGTAATTACGATCAATGACTCTGTTTAAATTA 65920 Query 62675 CTGACAATTACTTTGACCACATCCT-TCAGTTTGAGAAAATC-------AAATCGC-CCA 62725 | || ||||| | | || | | | ||| ||| | || || ||| Sbjct 65921 CGAGTAACAACTTTAGCAATTTCATGTAATTTTTTGAAGTTGTATGTGGAAGTCTTACCA 65980 Query 62726 TCTA------TTACAAACA-TGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACC 62776 || || ||| | || | || ||||| || |||| |||||||| || Sbjct 65981 TCCTCAGAAGTTTCAATGAATGCTGGTAAGGCAACGGAAGCCAAGTTACAAACAGCAGTT 66040 Query 62777 TCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATTACTACACTTGATGGTTCC 62835 |||| | | | | |||| | || ||| ||| ||| || | |||||||| || Sbjct 66041 TCATCTGGAGCTGAGTATTCAACAATTTCACAGCATAAGTTTGATG-ACTTGATGACACC 66099 Query 62836 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 62895 ||| |||| ||||||| ||| ||||||| |||||||| |||| || ||| || ||||| Sbjct 66100 TAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGTGTACC 66159 Query 62896 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 62955 ||||||| | |||| ||| | ||| | | ||| | | | || || || || || Sbjct 66160 AGTTTCAGTTTGAGCTTCCAAAATGGAATACCATAATTTTTGGGCTTTGAT---AGTCTT 66216 Query 62956 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63015 | |||| | ||||| | ||||| | || |||||||| || || || Sbjct 66217 ACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAACAATC 66276 Query 63016 GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63075 | | |||||| | ||| | | || | ||| || | || | || || Sbjct 66277 GCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACACG 66336 Query 63076 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 ||||| || |||||||||||||| ||||| || | |||||| | | | |||||| Sbjct 66337 CTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTC 66396 Query 63136 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63195 || || ||||| ||| ||| | || | | ||||||| |||||| ||||||| Sbjct 66397 TTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATGCCATGGTTCCAG 66456 Query 63196 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 ||| | ||| | | ||||| | ||| || || ||||| || | || | || ||||| Sbjct 66457 GTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATAACGGGCAGTGTT 66516 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 ||| |||| | | ||| ||||| | ||| || || ||||| || || || | || || Sbjct 66517 ATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTA 66576 Query 63316 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| | | |||||| ||| || |||||| || || || || |||| || || Sbjct 66577 AGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAAT 66636 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 || || ||| || || || || || || ||||| ||| || ||| ||||| || Sbjct 66637 CAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAAC 66696 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 | ||||| |||||||| | ||| || ||||| || || || ||||| || Sbjct 66697 CAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGC 66756 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 ||||||||| ||||| ||| | | || ||||| || | ||| | || ||||| | Sbjct 66757 GTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGCCTCGATATCTCT 66816 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG-T 63614 || || |||| |||||| | ||| | | || || || | ||| | | |||| Sbjct 66817 ACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTCGGCCA-CTTGAC 66875 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAA 63673 ||| ||| | | || || || |||||||||||||||||||||||| |||| |||| Sbjct 66876 CGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATAACTGTACTGAA 66935 Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC 63733 || |||| || || | ||| | ||||| | ||||||||| | || | || | || Sbjct 66936 AA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCATGACAATATTG 66994 Query 63734 ATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAAT 63793 | | | || || || ||| | || ||| | || |||||| || | | Sbjct 66995 TAGACATCATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTGACGTATCTATAA 67054 Query 63794 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 | ||| || | || | | |||| ||||| | |||| ||| |||| ||| || | ||| Sbjct 67055 AGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAAATTAGAAATGGCA 67114 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 ||||| || ||||| |||| ||||| ||||| Sbjct 67115 ATTCTGGCCGCTAGGGTGGCGTAATCTGGATG 67146 >seq1 Length=408578 Score = 187 bits (206), Expect = 3e-42 Identities = 585/898 (65%), Gaps = 11/898 (1%) Strand=Plus/Minus Query 32350 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 32409 |||| |||||||| || |||||||| ||| || | |||||||| || || || | Sbjct 198164 CTTG-GACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTGGTCT 198106 Query 32410 TACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttt 32469 |||| | || || || ||||||||||||||||| || || || || || ||| | Sbjct 198105 TACCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCT 198046 Query 32470 tAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTT 32529 | || || || | || ||| || ||||| || || | ||| ||||| | | Sbjct 198045 TGTTACCGAAAGCAACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGT 197986 Query 32530 CACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT-TCTT-GTTCAAT 32587 || ||||| |||| | |||||| | || | ||||| | |||| ||||||| Sbjct 197985 CAGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAAT 197928 Query 32588 AGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG 32647 || || || || | ||| | || | || ||| | | ||||| Sbjct 197927 TTCCACAGCCTCGGTGACAATTTTTTCAACGATGGCTGGGTCTGGTTTGTTCTTCAAATG 197868 Query 32648 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 32707 |||| ||| ||||| || ||| ||| | ||| |||||||||| || |||||||| Sbjct 197867 GGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTT 197808 Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 |||||| || | |||||||| | || | |||||| | ||| || ||||| ||||| || Sbjct 197807 GGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGA 197748 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 || || || || | ||||| | | |||||||||| ||||| || ||| | ||| Sbjct 197747 ACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGC 197688 Query 32828 G---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 | ||| || ||||| || |||||| |||||||||| | || || || Sbjct 197687 GTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGT 197628 Query 32885 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 32944 | || ||||| || | | | |||| ||| || || | || ||||| ||||| Sbjct 197627 GTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGTATCGATCAA 197568 Query 32945 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCT 33004 | || |||| || ||||| |||||||| ||||| || |||||||| | | Sbjct 197567 CAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTT 197508 Query 33005 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33064 ||||| | ||| || ||||| || | || ||| | || |||||||| || || || Sbjct 197507 TGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACC 197448 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--GT 33121 |||| || || ||||| || | || || ||| || | ||| ||| || | Sbjct 197447 GTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTCTCGTTCAT 197388 Query 33122 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 | || ||||| |||| |||||| ||||| | ||| | |||||| | ||||| || || Sbjct 197387 TCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGA 197328 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 33239 || || || || || | |||||| ||||| || | || || |||| |||| Sbjct 197327 AGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACA 197270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633605886441200