Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178455.1_202017-04- 22] 3,297 sequences; 12,571,070 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq525 143 6e-29 seq28 127 5e-24 seq6 125 2e-23 >seq525 Length=300 Score = 143 bits (158), Expect = 6e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| ||||| || || || ||||| ||||| ||| || ||| Sbjct 100 CAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCCGAC 159 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| || ||||| || |||||||| ||||||||||| || || Sbjct 160 ACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAACAG 219 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || || || || || |||||||| || || |||| | || || ||| | Sbjct 220 AGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAAC-CTTGTCTGACTACAACAT 278 Query 178103 CCAAAAAGAATCAACACTGCA 178123 |||||| ||||| || || || Sbjct 279 CCAAAAGGAATCTACTCTTCA 299 >seq28 Length=31490 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || ||||| || || || ||||| ||||| ||| || ||| Sbjct 82 CAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCTGAC 141 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 142 ACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAA 201 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || |||||||| || || || | || || || | Sbjct 202 AGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAATATT 261 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 262 CAAAAGGAGTCCACTCTTCACCTTG 286 >seq6 Length=259691 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| || ||| Sbjct 8452 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCTGAC 8511 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||| ||||| || || || ||||| ||| Sbjct 8512 ACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAACAA 8571 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| || ||| | |||| || ||| || Sbjct 8572 AGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAACATC 8631 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | || |||||| | ||| Sbjct 8632 CAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGA 8670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203680351008618