Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178465.1_202017-04- 21] 1,925 sequences; 12,039,202 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq26 125 5e-24 >seq26 Length=77113 Score = 125 bits (138), Expect = 5e-24 Identities = 169/232 (73%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || | || || ||||| |||||| | || ||||| ||| | Sbjct 31803 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 31862 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | |||| | ||||| |||||| | || |||||||| Sbjct 31863 GACACGATCGATAACGTTAAGTCGAAAA-TCCAGGACAAGGAAGGTATCCCTCCAGATCA 31921 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC----GAACGCACTTTAGGCGATT 23785 ||| | || || |||||||| || |||||||||||| |||||| | | |||| Sbjct 31922 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCT----GATT 31977 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||| || |||||||| || || ||||| || || || ||| |||| || Sbjct 31978 ATAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 32029 Score = 113 bits (124), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || || || || || || || || || ||||| || | Sbjct 31575 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 31634 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 31635 GACACTATCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATTCCTCCAGATCA 31693 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC----GAACGCACTTTAGGCGATT 23785 ||| | || || |||||||| || || || |||||| |||||| | | |||| Sbjct 31694 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCT----GATT 31749 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| || || |||||||| |||||| | || ||||| | |||| || Sbjct 31750 ACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 31801 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || || | |||||||| || | Sbjct 31347 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 31406 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 31407 GATACCATCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATCCCTCCAGATCA 31465 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || || ||||||| | || || || ||||| Sbjct 31466 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 31525 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | || || || || || ||| |||| || Sbjct 31526 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 31573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001669977900