Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178495.1_202017-04- 21] 1,028 sequences; 11,708,083 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq11 136 5e-27 seq286 114 2e-20 seq7 102 1e-16 >seq11 Length=222572 Score = 136 bits (150), Expect = 5e-27 Identities = 389/589 (66%), Gaps = 28/589 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| |||| || ||||| | ||| ||| ||| || ||||||||| || Sbjct 145004 AAGTTTGAAGATTTGGGTGTCGGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGA 144945 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517 || ||||| | || ||||| | | ||| ||||| | || | ||| | Sbjct 144944 GCGTTTGCAAGTCGAATCTTTCCTCCTTCAGTTATAGAAAAACTGGGTATTTCTCATGTT 144885 Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577 ||||| | |||| | || ||||| ||| ||||| || ||||| || || ||| Sbjct 144884 AAAGGTTTGCTATTGTACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATT 144825 Query 164578 GCT-CAAGCTTTTAAATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGA 164632 | | ||| | | ||| || || || ||||| || |||||||| ||| | |||| Sbjct 144824 GGTACAA--TGCTGAAT-GCTAAAGAGCCC--AAAATCGTCAATGGTCCAGAAATTTTGA 144770 Query 164633 ACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAG 164692 ||| || || ||| ||||||| || || | || || ||| |||| || |||| || Sbjct 144769 GCAAGTACGTTGGTTCTTCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAG 144710 Query 164693 AACAAAAGAAAGC--AGGTTTAGCTAG-TAAATTACATGTTATTGTTTTTGATGAGATAG 164749 || | | | || ||| | || | | |||||| ||||| |||| |||||| | | Sbjct 144709 AATATAGG---GCCAAGGGTGAGGAATCTTCCTTACATATTATTATTTTCGATGAGCTGG 144653 Query 164750 ATGCTCTTTGCAAAAAACGTGGT------GATAATATTATTCATGATG----CAGTG--G 164797 || || ||| ||| | | ||| | | || || | || | || || | Sbjct 144652 ATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAG 144593 Query 164798 TTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAG 164857 ||||||| ||| | ||||||| |||||||| || || ||||||||||| || | | Sbjct 144592 TTAATCAATTGTTAGCTAAAATGGATGGTGTTGATCAGTTGAATAATATTTTGGTTATTG 144533 Query 164858 GTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAAT 164917 |||||||||| || |||||||| || | |||| | || || || ||| |||| ||| Sbjct 144532 GTATGACCAATCGTAAAGATTTAATAGACGGTGCTCTTTTGCGTCCAGGTAGATTTGAAG 144473 Query 164918 TGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 | || | ||||| |||||||| || ||||| | || |||||||| Sbjct 144472 TCCAAGTTGAAATTCATTTACCCGATGAAAAAGGAAGACTCCAAATTTT 144424 >seq286 Length=53926 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 19341 TAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAG 19400 ||||| || | || || ||| |||| ||||| || ||||||||| | | |||||| | Sbjct 30357 TAAGAACTACAAAGATTCCTCAAATTGGTGACAAATTTGCTTCTCGTCACGGTCAAAAGG 30298 Query 19401 GCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGC 19460 | || |||||| | |||||| |||||||||||| ||||| ||| ||||| || | Sbjct 30297 GTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACCGCAGAAGGTATTGTTC 30238 Query 19461 CGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||| | ||||||||||| |||||| ||||| ||| ||||| Sbjct 30237 CAGATTTGATTATTAACCCTCATGCTATTCCATCTCGTATGAC 30195 >seq7 Length=262544 Score = 102 bits (112), Expect = 1e-16 Identities = 366/570 (64%), Gaps = 43/570 (8%) Strand=Plus/Minus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAAT-TATC 6758 |||||||||||||||||| | |||||| ||| || || |||||| | ||| | | Sbjct 20639 GGATGAGGATTATAATCTTCAATTTCAAAGTCTGTCAACTTGAAATCA--TCAATGTCTT 20582 Query 6759 AGACtttttttttAATATTACAACAGGTGAA-GGTTTT--ATTGATCGAGTTAATTGTTC 6815 ||| | ||||||| || | ||| ||| || ||| || || | |||||| Sbjct 20581 TGACGTCCCTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATT--TCTGGTGATTTGTTC 20524 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||| | || | || || ||| ||||| ||| ||||| || | |||||||| || || Sbjct 20523 TTTCAAGGCATCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTC 20464 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 |||||| | ||| || ||| ||| |||||| | || || || ||||| || || | Sbjct 20463 ACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAAT 20404 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAG-ATAAAA 6994 ||||| ||||| || || |||||||| || | ||| || || ||| || ||| Sbjct 20403 GTTAAATGGTACTCCCAACCCCATATCACAAGAACGTTGGTACAAT----AAGCATGAAA 20348 Query 6995 ---------TATTG------------TCTATAG---------CATAAAATTGACACAATA 7024 || | ||| | | |||| || || | || | Sbjct 20347 GGCGGGGCTTACCGGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAA 20288 Query 7025 CATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAA 7084 ||| ||||| || ||| | | || | ||||| ||| ||||| ||| |||| | | Sbjct 20287 TATGGCATGGCGGCAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGA 20228 Query 7085 TACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATAC 7144 | | |||||| | |||||||| |||| ||| |||| || |||||||| |||| Sbjct 20227 TTCTTCTATCGTAGGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATAC 20168 Query 7145 CCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAA 7204 | || || ||| | || || | | || ||||| |||||||| |||||||||| Sbjct 20167 CTTGTCCAGTATAGTCGTCATCGCACGTCTTGTATTTAGCACCAAAATGCCTCCATTGAA 20108 Query 7205 ACCCATAAATAGGACCTAAATCACCTTCTT 7234 | || |||| || || | ||| ||| ||| Sbjct 20107 ATCCGTAAACGGGCCCCAGATCTCCTACTT 20078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595864343044800