Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20eubayanus_20[genbank_20GCA_5F001298625.1_202015-11- 04] 24 sequences; 11,734,173 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq12 104 1e-17 seq5 91.5 9e-14 seq11 84.2 1e-11 >seq12 Length=1033978 Score = 104 bits (114), Expect = 1e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || | ||| ||||| || || || ||||| ||||| || ||||| |||| Sbjct 476399 CACCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAG 476340 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 ||||| | ||| ||||||||||| ||| ||| || || | ||| ||||| | | Sbjct 476339 ACAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 476280 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || ||||| || || |||| || || | | ||| ||||| | || || Sbjct 476279 GAATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTGTCTGAAGATTCAA 476220 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || || || || || || || || | ||| || |||||||||||||| || Sbjct 476219 CTTCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 476168 >seq5 Length=401362 Score = 91.5 bits (100), Expect = 9e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | ||| || ||||| || || || || ||||| |||||||| ||||| Sbjct 47679 ACCACCTCTCAATCTCAAAACTAAATGTAAAGTGGATTCCTTTTGGATATTGTAGTCAGA 47620 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | ||| ||||||||||| ||| ||| ||||| | ||| ||||| | || Sbjct 47619 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGG 47560 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| || || | | ||| ||||| | || ||| Sbjct 47559 GATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTGTCAGAAGATTCAAC 47500 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAA 33361 |||| ||| || || || || || | |||||| || ||| Sbjct 47499 TTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAA 47460 >seq11 Length=632881 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | ||| || ||||| || || || || ||||| || ||||| || || Sbjct 600547 ACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGA 600606 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | ||| ||||||||||| ||| ||| || || | ||| ||||| | || Sbjct 600607 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 600666 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || |||| ||| || | | ||| ||||| | || ||| Sbjct 600667 GATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAAC 600726 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAA 33360 || ||||| || || || || || | ||| || ||||| Sbjct 600727 TTCTAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 600765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777506757552