Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20eubayanus_20[genbank_20GCA_5F001515405.1_202016-01- 13] 47 sequences; 11,649,856 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq35 140 3e-28 seq34 134 1e-26 seq27 125 6e-24 seq37 114 1e-20 >seq35 Length=393679 Score = 140 bits (154), Expect = 3e-28 Identities = 173/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||||||||| |||| || | || || ||||| ||| Sbjct 68295 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAGACCATAACCTTAGAGGTCGAGTCTTCT 68236 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| ||||| ||||| ||||| || ||||| Sbjct 68235 GACACGATCGACAACGTCAAGTCCAAGATTCA-AGACAAGGAAGGTATTCCTCCAGACCA 68177 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||| || || || || || |||| | | ||| || || || || Sbjct 68176 ACAAAGATTGATTTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCGGACTATAA 68117 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 |||||||| || ||||| || || || || ||||| |||||||| || ||||| Sbjct 68116 CATTCAAAAGGAGTCCACTCTGCACTTGGTCCTAAGACTAAGAGGTGGCAATTA 68063 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||||||||| |||| || | || || ||||| ||| Sbjct 68979 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAGACCATAACCTTAGAGGTCGAGTCTTCT 68920 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| ||||| ||||| ||||| || || || Sbjct 68919 GACACGATCGACAACGTCAAGTCCAAGATTCA-AGACAAGGAAGGTATTCCTCCGGATCA 68861 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | |||||||| || ||||| | ||||| | | || || |||||||| Sbjct 68860 ACAGAGGTTGATTTTTGCTGGTAAACAGCTGGAAGACGGCAGAACGCTGTCTGATTACAA 68801 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || || || || |||| |||||||| || Sbjct 68800 CATCCAAAAGGAGTCTACTCTGCACTTGGTCTTAAGACTAAGAGGTGG 68753 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || ||||| |||| || | ||||| ||||| ||| Sbjct 68523 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACCATAACCTTGGAAGTTGAGTCTTCT 68464 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || || || ||||| || ||||| || |||| Sbjct 68463 GACACGATTGA--CAATGTAAAGAGTAAGATACAGGATAAAGAGGGCATTCCTCCGGACC 68406 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | ||||||||||| || ||| | ||||||| | | || || ||||||| Sbjct 68405 AACAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACGCTGTCTGATTACA 68346 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || |||||||| || || || || || || | || || ||||| || Sbjct 68345 ACATCCAAAAAGAGTCTACTCTTCACTTGGTCTTGAGACTGAGAGGTGG 68297 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||||||||| ||||| |||| || | || || ||||| Sbjct 69210 ACTATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACTTTAGAGGTCGAGTCC 69151 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| ||||| | ||| | || | ||| ||||| ||||| ||||| || || Sbjct 69150 TCCGACACGATCGACAACGTCAAGTCCAAGATTCA-AGACAAGGAAGGTATTCCTCCGGA 69092 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | |||||||| || ||||| | ||||| | | || || ||||| Sbjct 69091 TCAACAGAGGTTGATTTTTGCTGGTAAACAGCTGGAAGACGGCAGAACGCTGTCTGATTA 69032 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| || || || || || || || | || || ||||| || Sbjct 69031 CAACATCCAAAAGGAGTCTACTCTGCACTTGGTCTTGAGACTGAGAGGTGG 68981 >seq34 Length=182383 Score = 134 bits (148), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||||||||| ||||| ||||||| | ||||| || || |||||||| || Sbjct 150129 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 150070 Query 25068 GAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || || || || | || | ||| ||||||||||| || |||||||||||||| | Sbjct 150069 GA--CAATGTCAAATCCAAGATTCAA-GACAAAGAAGGTATCCCACCTGACCAACAAAGA 150013 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||| || || ||||| ||||| | | | || || ||| ||||| |||||| Sbjct 150012 TTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAA 149953 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| |||||||||| | || | ||||| || Sbjct 149952 AAGGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 149912 >seq27 Length=402821 Score = 125 bits (138), Expect = 6e-24 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 ||||| || |||||||| ||||| ||||||| | ||||| || || |||||||| || Sbjct 49972 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 50031 Query 25068 GAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || || || ||| |||| | ||| ||||| ||||| || || ||||||||||| | Sbjct 50032 GA--CAATGTCAAGTCAAAGATTCAA-GACAAGGAAGGTATCCCTCCTGACCAACAAAGA 50088 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||| || || ||||| ||||| | | | || || || |||||||| ||| Sbjct 50089 TTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAATATCCAA 50148 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| |||||||||| | || | ||||| || Sbjct 50149 AAGGAATCCACTTTACATTTAGTTTTGAGATTGAGAGGTGG 50189 >seq37 Length=384943 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| |||||||| | || || | ||||| || || || Sbjct 8709 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCTTCA 8768 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || ||| | || | ||| ||||| ||||| |||||||||||| Sbjct 8769 GACACTATTGA--CAATGTCAAGTCTAAGATTCAA-GACAAGGAAGGTATTCCACCTGAC 8825 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || ||||| || || ||||| ||||| | | ||| || || ||| Sbjct 8826 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTAC 8885 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| || ||||| |||| || || | || | ||||| || Sbjct 8886 AACATCCAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGAGGTGG 8935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327751784305