Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20eubayanus_20[genbank_20GCA_5F001515405.1_202016-01- 13] 47 sequences; 11,649,856 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12 154 2e-32 seq27 152 6e-32 seq29 141 1e-28 >seq12 Length=580751 Score = 154 bits (170), Expect = 2e-32 Identities = 616/959 (64%), Gaps = 15/959 (2%) Strand=Plus/Minus Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954 ||||| ||||| ||||| |||| || |||| | |||||| || | |||| Sbjct 306180 TTACAAACAGCAGTCTCATCTGGAGCAGAGTATTCAACAATTTCACAGCACAAATTAGAT 306121 Query 47955 CATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAA 48012 | |||||| |||||| || | || || ||| ||||||| || |||||||||| Sbjct 306120 GACTTGATAACACCCAAGTTCTTTTGGTTGGATTTCC--TGTTACAAGCATCCTTGTAAA 306063 Query 48013 GCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAG 48072 | ||| ||||| |||||||| | || | ||| | |||||| | ||| | | | Sbjct 306062 CAACAAATGGTGTACCAGTTTCCGTTTGTGCTTCCAAGATAGAGTACCATAATTTTTGGG 306003 Query 48073 CCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATT 48132 |||| ||| || || | | || | |||||| ||||||| || |||| Sbjct 306002 CCTTGATAGT--CT-TACCACGACCTTCTTTTTCGTAACGGGTATATAGGGCTTCGAATT 305946 Query 48133 CATCCCCATACACATTATCTAA--CCCAGGACATTCAT-TAGGACACATCAATGACCAAT 48189 |||| || || ||| | || | || || || || ||||| | | || | |||| Sbjct 305945 CATCACCGTA-ACAGTCACTCAAGCCTGGGGCAG--ATGTAGGAGAGAATAAAGTCCAAG 305889 Query 48190 CCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAAT 48249 | | | || || | |||| || | |||||| | ||| |||||| ||||||| Sbjct 305888 TGCCGTTTTCTTCGACACGCTTCATGAAAAGATCTGGAACCCATAGAGCTGGGAATAAAT 305829 Query 48250 CCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATAT 48309 | || | | | |||||| || || |||| || ||| || | ||||| | |||| Sbjct 305828 CTCTTGCACGGATTTCTTCCTTACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATAT 305769 Query 48310 CAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGAT 48369 |||| |||||||| || ||||||| || | |||| |||| || ||||| ||||| | Sbjct 305768 CAGCGTGCCATGGCTCCAAATATAGGGCAAAGGCACCAGGTCTCTTGTTACCACCTTGGT 305709 Query 48370 CTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATAC 48429 | | ||| | |||||||||||| | || | | ||| || | | || || || | | Sbjct 305708 CAACATAACGGGCAGTATTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCC 305649 Query 48430 CATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATAC 48489 | || || || | ||| ||| || | || | || || || | ||| |||| Sbjct 305648 CGTTTGTACCAGCAATGTAAGAGCCGGTTGCACGAATGTTGTGGATATGTAGACCAATAC 305589 Query 48490 CACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATAC 48549 | || || ||||||| || | |||||| || | ||||| ||||| ||||| || Sbjct 305588 CTCCAGCAGTTTTAGAAATCAAAGCACATTCCTTCAAAGTATCGTAAATACCTTCAATGG 305529 Query 48550 TATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAAT 48609 |||||| |||| | || ||||| |||||||| || | ||| || | | Sbjct 305528 AATCATCCTTCATTGCAACTAAGAAACAGGAGGACATTTGAGGCTTTGGAGTACCAGCGT 305469 Query 48610 TAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAA 48669 | ||||| |||||||| |||||| |||| |||| || | || ||||| ||||| | Sbjct 305468 TGAATAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATAGGTTTCTA 305409 Query 48670 TAACAGAATCTAT-ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 | | | || || | || | || ||||||| | || | ||| | | | || Sbjct 305408 AAGCGGCCTCAATGTTTTCACCG-TGAATACCTAGGGCGACTCTCATGATTAAGTGCTGT 305350 Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788 || | |||| ||| || || ||| |||| | || || |||||| ||||| ||| Sbjct 305349 GGACGTTCAGCAACTTGACCGTTGATTCTCAATAAGTAAGAACGTTCCAAAGTTTTGAAA 305290 Query 48789 CCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTT 48847 || || || | || |||||| | |||| | ||| | ||| |||| | | ||||| Sbjct 305289 CCGAAGTAACTATACTGAAAGTCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTT 305231 >seq27 Length=402821 Score = 152 bits (168), Expect = 6e-32 Identities = 597/935 (64%), Gaps = 9/935 (1%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || || || |||| |||||| ||||| |||| ||| || ||| | | ||| Sbjct 215158 AGAGCAATGGAAGCTAAATTACAAACAGCAGTTTCATCTGGGGAAGAATACTCGACGATT 215217 Query 47937 TC--AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGT 47994 || | |||| || || | ||||||| ||||||| ||||| || || | ||| Sbjct 215218 TCGCAACACA-AGTTTGACG-ATTTGATGGTACCCAGGTTTTGTTGGTTGGTCTTTCTGT 215275 Query 47995 TACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| || ||||| |||| ||| || ||||| || |||||| | || | || | ||| | Sbjct 215276 TACAGGCATCCTTATAAACCATGAAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGG 215335 Query 48055 ATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAG 48114 | ||| || | |||||| || | | || | | || |||||| | Sbjct 215336 CGTACCATACCTTTTGAGCCTTGATG---GTTTTACCACGACCTTCTCTTTCGTAACGGG 215392 Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGAC 48174 |||||| || || ||||| || || | || | || || || || || | || Sbjct 215393 TATATAGCTCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGGGCAGCACTTGGTG 215452 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 | | || | ||| || |||| | || || | |||| || | ||| || ||||| | Sbjct 215453 AGAATAAGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATA 215512 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 |||| || ||||| || | | | |||||| || ||| | || || | | || | Sbjct 215513 GAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGA 215572 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 |||||| | || || ||||||||||| || || | | || | |||| |||| | Sbjct 215573 CAAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCT 215632 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | ||||| ||||| || | || | ||||| ||||| | || | | ||| || | | Sbjct 215633 TGTTACCACCTTGGTCCACGTAACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCA 215692 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 || ||||| |||| ||||| || | ||||||| || | | | ||||| | | Sbjct 215693 ACCCGTTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGA 215752 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 | || ||| | ||||||||| | || || || | |||||| ||| | || || | Sbjct 215753 TATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGT 215812 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||| ||||| || || || |||| | || |||||| ||||||||| |||| Sbjct 215813 AAATACCTTCAATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGAT 215872 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 | || || | |||||||| ||| || || || || | || || || || | || Sbjct 215873 GTGGCGTACCGGCATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCA 215932 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714 | || || || | | || || || ||||| | || ||||||| | ||||||| Sbjct 215933 AGTTGTAAGTCTTCAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCA 215992 Query 48715 TTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTT 48774 | | || || ||| || | ||| | | || | || | | | || || || || Sbjct 215993 TGACCAAATGTTGGGGACGTTCGGCCACTTCACCGTCTAGTCTTAGCAGGTAGGAACGTT 216052 Query 48775 CCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 ||| || ||||| ||||||||| |||| ||||| Sbjct 216053 CCAGAGTCTTAAACCCAAAATAGGTGTACTTGAAA 216087 >seq29 Length=397901 Score = 141 bits (156), Expect = 1e-28 Identities = 363/547 (66%), Gaps = 7/547 (1%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| |||||| ||||| || || | || |||||||| | ||||| || || || Sbjct 366147 AACAACAAACAGGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAACTCGTTGGAG 366088 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || || || ||||||| ||||| || || |||||||| || || || || || || Sbjct 366087 AAGGTCAACCCGGGCATCATACCTCTCTTCTTCAACCAGAAGATGGAGGCGAAGGACCCG 366028 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| | |||||| | | || || || ||||||||||| || | || || Sbjct 366027 GAGAAGAAAACACCTTCGATGGAGGCGAAGGCGACTAGTCTTTCACCGAACAGCGCGTCT 365968 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | || |||||| | || ||||| || ||||||| | ||| || || || Sbjct 365967 GCGTCTTGGATCCATCTAAGGGCCCATTCGGCCTTCTCGCAAATTTCTGGGATGGTGTCG 365908 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 || | || || | | || || | || ||| || | || | ||| ||||| || Sbjct 365907 ATGGCGTTGAACAAGAATTCACTTTCCTTTGGATCCTTGATGTAGGTATCGATCAACAAG 365848 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTT-GC 19310 ||| |||| |||||||| ||||| ||||| || || || ||||| |||| |||| || Sbjct 365847 GAGTAGGTTTCGGAATGAATGTTTTCGATAGCGATTTGGAAACCGTAGAAAC-TCTTGGC 365789 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 ||| | ||||| || || | | || | |||||||| ||||| || || || || || Sbjct 365788 TTCCGGGATCTGGACCTCGGTGGAGAAATTCTCGACCAAGTTTTCGTTGACAATACCGTC 365729 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAAT- 19428 || || || || || | || | || | || || |||| | | | | | | Sbjct 365728 GGAGGCGGCGAAGAAGGCAAGGAC-TCTTGAGATGAAGAACCTTTCGTTTTCGTTCATTC 365670 Query 19429 --GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 | ||||| |||| ||||| || || ||||| | ||| || | ||||| ||||| | Sbjct 365669 TGTTGTTCCAGTCATGGATATCCTTGGACAAATCGATTTCCTCGGCAGTCCAGAAAGAGG 365610 Query 19487 CCTCTGC 19493 |||| || Sbjct 365609 CCTCGGC 365603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108469761080