Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq14 131 4e-25 seq10 91.5 3e-13 >seq14 Length=778926 Score = 131 bits (144), Expect = 4e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 319796 TGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG 319855 ||| ||||| || ||| | |||||||||||| ||| |||| | |||| || Sbjct 599065 TGTCAGAATGGGTGTTGTCAATATCGTGTTCCACATAAACAGTGCGACATTCATCTTGAG 599006 Query 319856 AGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCC 319915 |||||| || || | |||||| || |||||| ||||| || || ||||| || || | Sbjct 599005 TGGGGAAGCCGTCGACCTGGCCATTAGCAATAGATCGCATTAGAGTAGATTTTCCGGCAC 598946 Query 319916 CGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCA 319975 | ||||| ||||| ||||| || | | || || |||| | || | || ||||| | Sbjct 598945 CATTTGGGCCACATAGACCATATCTTCTACCTCGCTTCAACCTCAATTGAGTCTTGTTTA 598886 Query 319976 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 | |||||||| |||||||||||| ||||||||||| | ||||| ||| ||||| Sbjct 598885 GCAGAATTTTGGCACCATATGCCAAGGAAAATTCACAGTTACACAAATCTTCACC 598831 >seq10 Length=743843 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 || ||||||||||| || ||| || ||| | || ||||| || ||| | |||| || Sbjct 391558 GGTATGAACGCTGACCTAATGAACCAATACGTTGAGTTCGTTGCTGACAGACTTTTGGTC 391617 Query 230512 GCACTTGGTTACGAGAAAGTGTACAA-CTCTAAGAACCCCTTTGCATTTATGGAGCTCAT 230570 || ||||| || ||||| ||||| || || |||||||| | |||||||| ||| Sbjct 391618 GCCTTTGGTAACAAGAAATACTACAAGGTCGAA-AACCCCTTCGACTTTATGGAAAACAT 391676 Query 230571 TTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGG 230630 || | || |||||||||||||| |||||| | ||| ||| || || | | |||| Sbjct 391677 CTCCTTGGCTGGTAAGACCAACTTCTTTGAAAAGAGAGTCTCTGATTACCAAAAGGCTGG 391736 Query 230631 TGTGATG 230637 ||| ||| Sbjct 391737 TGTTATG 391743 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 118910 TGGGTTATTTTTGACGAAGTTCATTATATCAATGATAAATCCAGGGGTTCTGTATGGGAA 118969 |||||||||||||| ||||||||||| || | || ||| || ||| |||||||||| Sbjct 340319 TGGGTTATTTTTGATGAAGTTCATTACATGAGAGACAAAGAAAGAGGTGTTGTATGGGAA 340378 Query 118970 GAGTCAATCATTTTGATGCCGGATACGATGCGCGCTGtttttttGTCTGCAACGGTTCCG 119029 || |||||||||| |||| |||| | | || ||| ||||| || || || |||| Sbjct 340379 GAAACAATCATTTTACTGCCAGATAAGGTCCGTTATGTGTTTTTATCAGCCACTATTCCA 340438 Query 119030 AACGCGGTTGAATT 119043 || || | ||||| Sbjct 340439 AATGCAATGGAATT 340452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823769592710