Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq12 116 3e-21 >seq12 Length=1023116 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || ||| ||||||| |||||||| ||| ||| ||| | | Sbjct 60069 ATGCAGATTTTCGTTAAGACACTGACGGGTAAAACCATAACCCTCGAGGTTGAATCGTCT 60010 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||||| || ||||||||| | || ||||||| Sbjct 60009 GACACTATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCAA 59950 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || || ||||||||||| | ||| || |||| ||||| Sbjct 59949 CAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAAC 59890 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||||||| | || |||||||| || || |||| || Sbjct 59889 ATCCAAAAGGAATCTACTTTACATTTGGTGTTAAGACTAAGAGGTGG 59843 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| ||||| |||||| | || ||| ||||| ||| | || ||||| || || Sbjct 60441 AAAATTCAAGATAAGGAAGGTATTCCTCCAGACCAACAGAGATTGATTTTTGCCGGTAAG 60382 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 |||||||||||| | ||| | |||| ||||||||||| |||||||||||||| ||| Sbjct 60381 CAACTGGAAGATGGTAGAACGTTATCCGACTACAATATTCAAAAGGAATCTACTCTCCAC 60322 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 |||| || |||| |||| || Sbjct 60321 TTGGTCTTGAGATTGAGAGGTGG 60299 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| |||| || || || || || || |||||| ||| ||| | Sbjct 470032 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCT 470091 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | || | ||| || || || || |||||| | || || Sbjct 470092 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 470151 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||||||| | |||||||| || || ||| |||||||| || |||| || | || ||| Sbjct 470152 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTAC 470211 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||||||| | ||| |||| || |||| |||| || Sbjct 470212 AACATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 470261 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || |||||||| || ||| ||| | | Sbjct 60753 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 60694 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||||| || ||||||||| | || |||||| Sbjct 60693 GATACTATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCAG 60634 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || || ||||||||||| | ||| || |||| ||||| Sbjct 60633 CAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAAC 60574 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||| || ||| | || |||||||| || || |||| || Sbjct 60573 ATCCAAAAGGAGTCCACTTTACATTTGGTGTTAAGACTAAGAGGTGG 60527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||| ||||| ||| | || ||||| || || ||||||||| Sbjct 59748 GATAAGGAAGGTATTCCTCCAGACCAACAGAGATTGATTTTTGCCGGTAAGCAACTGGAA 59689 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| | |||| ||||||||||| |||||||| ||||| ||| |||| ||| Sbjct 59688 GATGGCAGAACGTTATCCGACTACAATATTCAAAAGGAATCCACTCTCCACCTGGTCTTA 59629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || |||||||||||||||||| ||||| || || ||||||||| Sbjct 60204 GACAAAGAGGGTATCCCACCAGATCAACAAAGACTTATTTTTGCTGGTAAGCAACTGGAA 60145 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTAC 29158 || | ||| || | ||||| || |||||||| |||||||| Sbjct 60144 GACGGTAGAACACTGTCTGATTATAACATTCAGAAAGAATCTAC 60101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335911254135