Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 1e-15 seq10 96.9 4e-15 >seq12 Length=1023116 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| |||||||| ||| |||| || ||| | | Sbjct 60069 ATGCAGATTTTCGTTAAGACACTGACGGGTAAAACCATAACCCTCGAGGTTGAATCGTCT 60010 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| |||||||| |||||||| || || || | || || Sbjct 60009 GACACTATTGATAACG-TCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 59951 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| || || || || ||||| |||| | ||| | ||||||||| Sbjct 59950 ACAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAA 59891 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||| ||||| | || | ||| | ||||| Sbjct 59890 CATCCAAAAGGAATCTACTTTACATTTGGTGTT 59858 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || |||||||| || | || |||||| | | Sbjct 60753 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 60694 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| |||||||| |||||||| || || || | || || Sbjct 60693 GATACTATTGATAACG-TCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 60635 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || || ||||| |||| | ||| | ||||||||| Sbjct 60634 GCAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAA 60575 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||| |||||| |||| | ||| | ||||| Sbjct 60574 CATCCAAAAGGAGTCCACTTTACATTTGGTGTT 60542 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||| || ||| | || || ||| | || Sbjct 60297 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATAACCCTAGAGGTTGAATCTTCC 60238 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| || || | ||||||||||| ||||| | || || Sbjct 60237 GACACTATTGACAACG-TCAAAAGTAAGATCCAAGACAAAGAGGGTATCCCACCAGATCA 60179 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| || | || || || || ||||| |||| | || || || || || Sbjct 60178 ACAAAGACTTATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACACTGTCTGATTATAA 60119 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||| || | ||| ||||| ||||| || | ||||| || || Sbjct 60118 CATTCAGAAAGAATCTACGTTGCATTTAGTGCTGAGATTGAGAGGTGG 60071 >seq10 Length=743843 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 116981 GAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGC 117040 ||||||||||||||||| || | ||||| | | || ||| || || || | Sbjct 391231 GAGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGA 391290 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || ||||| || | |||| || |||||||| || || |||||| |||| || Sbjct 391291 CTAGTCGCCTTTGCCTCTATCGAAGGTGTCTTCTTCTCCGGTTCCTTCGCCTCCATTTTC 391350 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||| | ||||| | || | |||||||| |||| ||| ||||| | || | ||| Sbjct 391351 TGGTTGAAGAAGAGAGGTATGATGCCCGGTTTGACCTTCTCTAACGAATTGATTTGCAGA 391410 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||| ||| |||| ||||||||| || ||| ||||| |||||| Sbjct 391411 GACGAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCATTTG 391458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219090515920