Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq12 111 1e-19 seq9 105 5e-18 >seq12 Length=1023116 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 || || | |||||| | |||| ||| ||||| || || ||||| ||||||||||||| Sbjct 60527 CCACCTCTTAGTCTTAACACCAAATGTAAAGTG--GACTCCTTTTGGATGTTGTAGTCGG 60584 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 || ||| ||| ||||||| ||| || || ||| |||| | ||| || ||||| | Sbjct 60585 ACAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGAG 60644 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | ||||| || || ||||| | |||||| | ||| ||| ||| | ||| Sbjct 60645 GAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGA 60704 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| |||||||| || || |||||||||||||| Sbjct 60705 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 60753 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | |||||| | |||| || | || ||||| ||||| ||||||||||||| | Sbjct 59843 CCACCTCTTAGTCTTAACACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 59902 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| ||||||| ||| || || ||| |||| | ||| |||||||| || Sbjct 59903 AAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 59962 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| | |||||| | ||| ||||||| | || Sbjct 59963 ATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATAGTGTCAGACGATTCAACC 60022 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| |||| || |||| ||| || || ||||| ||||| Sbjct 60023 TCGAGGGTTATGGTTTTACCCGTCAGTGTCTTAACGAAAATCTGCAT 60069 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||| | || ||| | | ||||||| Sbjct 470243 ACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCC 470184 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 470183 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 470124 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 470123 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTA 470064 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 470063 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 470032 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| || || ||||| |||||||| |||||||||| | ||| | | || Sbjct 59629 TAAG-ACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCCAT 59687 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||||| ||| || || ||| | || | ||| ||||| || || | |||||||||| Sbjct 59688 CTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTAT 59747 Query 18232 CGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 | ||| ||| | ||| || | ||| ||||||| | || || | ||| ||| Sbjct 59748 CCTGAATCTTGCT-CTTCACGTTGTCAATAGTGTCAGACGATTCAACCTCGAGGGTTATG 59806 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || |||| || || ||||| || ||||| Sbjct 59807 GTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 59841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| |||||||| |||||||||| | ||| ||| ||||||| Sbjct 60317 ACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTACCATCTTCC 60376 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||| || || ||| | || | ||| ||||| || || | ||||||||||| | Sbjct 60377 AGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGA 60436 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| |||||| | ||| ||||| | ||| || | || ||| | || Sbjct 60437 ATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAATGGTCTTA 60496 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| || || ||||| || ||||| Sbjct 60497 CCAGTCAGCGTCTTAACAAAGATCTGCAT 60525 >seq9 Length=443128 Score = 105 bits (116), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 18121 TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATT 18180 ||| ||||| ||||||||||||||||||||||| | || ||| ||| |||||||||| Sbjct 63277 TGTAAAGTG--GATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATT 63220 Query 18181 GTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT 18240 | || || ||| |||| | ||||||||| || || | |||||||| || ||| | Sbjct 63219 GCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCT 63160 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | |||||| | ||| ||||||| | || ||| | |||||| | || || | Sbjct 63159 TTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAG 63100 Query 18301 TCAATGTTTTTACAAAA 18317 |||| || || |||||| Sbjct 63099 TCAAAGTCTTGACAAAA 63083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343921404665