Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 235 5e-57 seq10 194 1e-44 seq9 152 5e-32 seq12 107 2e-18 >seq5 Length=565208 Score = 235 bits (260), Expect = 5e-57 Identities = 415/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 |||||| || |||| |||||||| || ||||||||||| |||| || | || || Sbjct 295858 TTCAACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGAAACAAATCTCTTGCACG 295799 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| ||| ||||||| | | ||| | ||| || || | || |||||||| Sbjct 295798 AATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCA 295739 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || ||||| | |||||| ||||| ||||| || || || ||||| ||||| ||||| Sbjct 295738 TGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACATAACG 295679 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||| || | || | | ||| || | | ||||| || | ||| | || Sbjct 295678 GGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACC 295619 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | ||||| ||| |||| || || | || | ||| || || || | | Sbjct 295618 AGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGT 295559 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 ||| || |||| || |||| ||||| ||||||||| || |||||||| |||||| || Sbjct 295558 TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTT 295499 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||||||||||||| || |||||||| | ||| || ||| | || |||| || Sbjct 295498 CATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGT 295439 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || ||| || ||||||||| ||||||| || || || || | || || || Sbjct 295438 TGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCGCTTC 295379 Query 23821 AATGTCCTCT-CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 |||| |||| ||||| || || | ||||| | ||| || | || ||| || | ||| Sbjct 295378 GATGT-CTCTGCCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGG 295320 Query 23880 C--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | ||| ||||| ||| | | | ||| ||||||| || ||||| || |||||||| Sbjct 295319 CCACTTGA--CCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTGAAACCAAAATA 295262 >seq10 Length=743843 Score = 194 bits (214), Expect = 1e-44 Identities = 542/820 (66%), Gaps = 19/820 (2%) Strand=Plus/Plus Query 57591 GCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG 57650 || ||||| || || ||||||| |||||| | || ||||||||||| | |||||| Sbjct 390904 GCCGAAGCCTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGATTGG 390963 Query 57651 GATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 || | | || ||| |||||| ||||||| || | || ||||||||| Sbjct 390964 AATAACAGAATGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGCC 391023 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || || || ||||||||||| || || ||||| |||| || || ||||| ||||| Sbjct 391024 GCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAAGTTCAAGTT 391083 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | ||||| | | || || || || ||| | |||||||| | ||||| |||| Sbjct 391084 CCAGAGGCAAAGAGTTTCTATGGTTTCCAAATCATGATTGAAAATATTCATTCTGAAACC 391143 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC-TGTTCAA 57886 || || | | |||||||| ||| | |||||| | | | || | | | ||||||| Sbjct 391144 TACTCCTTGTTGATCGATACCTACATCAAGGAC-CCTAAGGAAAGTGAATTCTTGTTCAA 391202 Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAA 57946 || || | || || || | |||| ||||||| |||||| | | | |||||| | Sbjct 391203 TGCCATTCACACCATCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGGATTCA 391262 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 | ||| ||| ||| | || || ||| |||| || ||| | |||||||| | || Sbjct 391263 AGACGCTGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTATCGAAGGTGTCTT 391322 Query 58007 CTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 ||| || || ||| || | || || ||| ||||||| | || |||||||||| | Sbjct 391323 CTTCTCCGGTTCCTTCGCCTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCCGGTTT 391382 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| || ||||| ||||| | | ||||| ||| | || || || ||||| ||| | Sbjct 391383 GACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGCATGCTT 391442 Query 58127 AATGTACTCTCACATTGTCAATAAACC-GACGCGGGATCGCATCTTG--GACATTATCAC 58183 ||| | | || | || ||||| ||| | | | | ||| | ||| |||| Sbjct 391443 GTTGTTCGCCCATTTGAAGAACAAACCAGACCC---AGCCATTGTTGAAAAAATTGTCAC 391499 Query 58184 CGAGGCGGTCGCGATCGAA-AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCG 58242 |||||| || | || ||| || || | || || ||| | || || ||| |||| | Sbjct 391500 CGAGGCTGTGGAAATTGAACAAAGA-TACTTCTTGGATGCCTTGCCAGTTGCCTTGCTAG 391558 Query 58243 GTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 |||||||| ||| | ||| | ||| ||||||| ||||| |||||||||||| ||| Sbjct 391559 GTATGAACGCTGACCTAATGAACCAATACGTTGAGTTCGTTGCTGACAGACTTTTGGTCG 391618 Query 58303 AACTGATTGGAGAGCGTCATTACAACACG---AAAAATCCGTTTGATTTTATGAATCTGA 58359 || |||| | | ||| ||| | |||| || || || |||||| | | Sbjct 391619 -CCT--TTGGTAACAAGAAATACTACAAGGTCGAAAACCCCTTCGACTTTATGGAAAACA 391675 Query 58360 TCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGT 58399 |||| | | || ||||| ||||| || ||||| | ||| Sbjct 391676 TCTCCTTGGCTGGTAAGACCAACTTCTTTGAAAAGAGAGT 391715 >seq9 Length=443128 Score = 152 bits (168), Expect = 5e-32 Identities = 417/639 (65%), Gaps = 0/639 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || ||| ||| |||||||||| || || ||||| ||||| ||| | || | || || Sbjct 234578 TTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCAGGGAATAAATCCCTTGCACG 234637 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| || | | ||| | | ||| | |||||| || | || || ||||| Sbjct 234638 AATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCGTGCCA 234697 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | | ||| |||||| || || |||||||| || || || || || || ||||| Sbjct 234698 TGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTGTTACCTCCTTGGTCCACATAACG 234757 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || || |||||| | || | | ||| || | | || || || | ||| || Sbjct 234758 AGCAGTATTGTTGAAAACACGAATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACC 234817 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | |||||| | | || | ||||| || || | ||| | || || | | Sbjct 234818 GGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGT 234877 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || |||| ||||| ||| || || || || || || ||| || || Sbjct 234878 CTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTT 234937 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || | | |||||| ||||||||||| | | || ||| | || || | || Sbjct 234938 CATGGCAATTAGGAAACATGAAGACATTTGGGGGTGTGGAGTACCAGCGTTAAATAAGGT 234997 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| ||||| || || |||| ||||| | |||||| || | | | | ||| Sbjct 234998 TGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAATTGTAGGTCTTCAGCACAGAATC 235057 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 || || ||||| ||||| | || || ||||| | || || || || | || | Sbjct 235058 GATATCACTACCGTGGATACCTAGCGCCACACGCATAACCAAGTGCTGTGGCCGTTCTGC 235117 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | | ||||| | | | | || ||| ||||| | || || || || |||||||| Sbjct 235118 CACTTCACCGTTCAGTCTTAGCAAATACGAACGCTCCAAAGTCTTGAACCCAAAATACGT 235177 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 ||| || || || | ||||| ||| |||||||| ||||| Sbjct 235178 ATACTTGAAATCTCTATCGTACACGATGGCCGAGTTCAA 235216 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || |||||| |||| || || || ||||| | || |||||| | || |||| | | Sbjct 63083 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 63142 Query 31261 CGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTC 31319 || | ||||| || ||| | | |||||||||| | || || ||||| || | Sbjct 63143 TGACAATGTCAAGTCAAAGATTCAAG-ACAAGGAAGGTATCCCACCTGACCAACAAAGAT 63201 Query 31320 TAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAA 31379 | || || ||||| || || ||||||||| || || || || || |||||||||| Sbjct 63202 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAA 63261 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| ||| | || | || | ||| |||| || |||| Sbjct 63262 AAGAATCCACTTTACACTTAGTCTTGAGATTGAGAGGTGGTA 63303 >seq12 Length=1023116 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || ||||| || ||| | || |||||| | ||| Sbjct 60297 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATAACCCTAGAGGTTGAATCTTCC 60238 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || ||||| || || | || || || || Sbjct 60237 GACACTATTGACAACGTCAAAAGTAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAA 60178 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || || |||||||| || || || ||||||||| Sbjct 60177 CAAAGACTTATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACACTGTCTGATTATAAC 60118 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||| || | ||| | || || ||| |||| || |||| Sbjct 60117 ATTCAGAAAGAATCTACGTTGCATTTAGTGCTGAGATTGAGAGGTGGTA 60069 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || ||||| || || | || || ||| | || Sbjct 60753 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 60694 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | ||||| | ||| |||||| ||||| | || || || ||| Sbjct 60693 GATACTATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCAG 60634 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || |||||||| || || || ||| || ||| Sbjct 60633 CAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAAC 60574 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || ||| | ||| |||| | ||||| || || |||| Sbjct 60573 ATCCAAAAGGAGTCCACTTTACATTTGGTGTTAAGACTAAGAGGTGGTA 60525 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| | || || || || || ||| | || |||||| | Sbjct 470032 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCT 470091 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | || | ||||| | || ||||||||||| | || || ||| Sbjct 470092 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 470151 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| || || |||||||| | ||| || || || Sbjct 470152 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTAC 470211 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| ||| | || |||| | ||| |||| || ||| Sbjct 470212 AACATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 470262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766305274640