Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9 192 5e-44 seq5 190 2e-43 seq10 149 6e-31 >seq9 Length=443128 Score = 192 bits (212), Expect = 5e-44 Identities = 979/1544 (63%), Gaps = 45/1544 (3%) Strand=Plus/Plus Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179 |||| | |||||| || || || || || ||||| || || | | | || || || Sbjct 233670 AATAAATATGGATTAACGACTTGGAATTCACCAGACAAGACACGACGAGAGTACATGTTT 233729 Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239 ||| |||||| | | || |||| | | |||||||| || || ||||| ||| Sbjct 233730 GAAGTCACTGGTTCGAAACATTCGTTATATCCAAGAATTTGAGAAGTTGAGGCAGTTGGC 233789 Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTA--GTT 37297 ||||| || ||| | ||||| ||||||||| | ||| |||| ||| ||| Sbjct 233790 ATTGGCGCCATTGTCAAAGAGTTTCTTAATCCATGTTTGACAATGTCCTTTCTTAAGGTT 233849 Query 37298 CATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACC 37355 | ||||||||| | | | ||| || | || |||||| ||| ||||||||||||| Sbjct 233850 --TCCCAATCCCACATACCAAATGGCTTAGCATT--CCACATGTCAAATTGTAGAATACC 233905 Query 37356 TTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCA 37415 |||| ||||||||| | | | || ||| || | | | || | ||| || Sbjct 233906 TTTAGAGGCTGGAGAACCTTCGAAAGTAGAATACTTACCTTCCTTCTGTGCCAATTCACA 233965 Query 37416 ACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGC 37475 | ||| || | |||| ||| || ||||||||||| ||| | || || ||| || Sbjct 233966 GGAGGCTTCAAGAGTAGCATGATAAATGGTTTCGAAAATCTGTTTGTTCAAAGTTTGAGC 234025 Query 37476 TTCTTCGCTATCGAATGCATAGCC-CAATAATATAAACACATCAGCCAAACCCTGAACAC 37534 |||||| || || | ||| | ||| | ||| | ||| |||| ||| ||||||| Sbjct 234026 TTCTTCTGATTCAAAAGG-TAGACGCAACATCATATAGGTATCGGCCAGACCTTGAACAC 234084 Query 37535 CGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAAT 37594 | | | || |||||||| || |||| || | | ||| ||||||||||||| Sbjct 234085 CCAAGGCAATAGGTCTATGCCTCATATTTGAATTTCTGGCTTCAGGAACTGGATAATAAT 234144 Query 37595 TGATATCTATTATTTTATTTAGATTTTTAACTAGT-ATTTTCGTAATTAT-TCTCAACTT 37652 | || || | | | || | | || | || | | ||| | |||| | | |||| Sbjct 234145 TACGGTCGATGACTCTGTTCA-AGTTATGGGTAATGACTTTAGCAATTTCATGTAAACTC 234203 Query 37653 GTCGAACATAAATACGTT-ATTATTAACAAATTTA-----CTCAACGAA----------- 37695 ||||| || | || | | | ||| || || | ||| || || Sbjct 234204 -TCGAAATTATA-ACTTGCAGTTTTACCATCTTCAGACATCTCGACAAATGCTGGGAGGG 234261 Query 37696 --ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTG 37753 ||||| |||||||||| || || ||||||| | | | | | | || || Sbjct 234262 CAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATACTCGACGATTTCAC 234321 Query 37754 TACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAG 37813 ||| | || ||| |||| || ||||| || ||| || | ||| | ||||| | Sbjct 234322 AACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTGTTACATG 234381 Query 37814 AATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCC 37873 || || || | || | || || ||| |||| |||| || | | ||| | | || Sbjct 234382 CGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATGGCATACC 234441 Query 37874 ATAAACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTTTCGTATTCTATATA 37931 |||| || ||||||| | | |||| | ||| | |||||| |||| Sbjct 234442 ATAACTTTTGGGCTTTAATGGT---TTTACCACGACCTTCCCT--TTCGTAACGGGTATA 234496 Query 37932 TAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACAT 37991 || | | ||| || | ||||| ||||| ||| ||||| | | ||| | | Sbjct 234497 TAGCTCTTCAAATTCGTCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAAAA 234556 Query 37992 TAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGC 38051 || || ||| |||| | || || |||| |||||| | ||||| | ||| | || Sbjct 234557 TAAAGTCCAGGGACCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGC 234616 Query 38052 AGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAA 38111 || |||||||| | | | | |||||| || || | ||||| | | ||| Sbjct 234617 AGGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAA 234676 Query 38112 ATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATC 38171 ||||| ||||| |||||||||||||| | ||| | | || || ||||| || | Sbjct 234677 GTCGAAGATATCTGCGTGCCATGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTGTT 234736 Query 38172 ACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACC 38231 |||||| || | | ||| | | | || || || | | | | |||||| | | || Sbjct 234737 ACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAACCC 234796 Query 38232 ATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGA 38291 ||| || | ||||| |||||| ||||||| ||| | | || || || | || Sbjct 234797 ATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATG 234856 Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 | || | ||||||||| || || || | ||| |||| ||| || |||||| | || Sbjct 234857 AAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAAT 234916 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411 |||||| ||| ||||||||| || | | || ||||| ||||||||| || ||| Sbjct 234917 ACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGTGG 234976 Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| || ||||||||||| || || || || || |||| || || |||| |||| Sbjct 234977 AGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAATT 235036 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 || || | | ||| ||| ||||||| ||||| |||||||| | || | ||| | Sbjct 235037 GTAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCTAGCGCCACACGCATAAC 235096 Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591 || || ||||| | |||| | || | ||| || | || | |||||| || || Sbjct 235097 CAAGTGCTGTGGCCGTTCTGCCACTTCACCGTTCAGTCTTAGCAAATACGAACGCTCCAA 235156 Query 38592 TGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTA 38633 || || | |||||||| |||| ||| ||||||||||||| Sbjct 235157 AGTCTTGAACCCAAAATACGTATACTTGA--AATCTCTATCGTA 235198 >seq5 Length=565208 Score = 190 bits (210), Expect = 2e-43 Identities = 417/622 (67%), Gaps = 2/622 (0%) Strand=Plus/Minus Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072 ||| || || | ||| || | |||||| | ||||| |||| ||| |||||| | | | Sbjct 295858 TTCAACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGAAACAAATCTCTTGCACG 295799 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132 | |||||| || || |||||||| | | |||||| || |||||||| ||||| Sbjct 295798 AATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCA 295739 Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192 |||||| | || | | | || || |||||||| | ||| ||||| | | ||| | Sbjct 295738 TGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACATAACG 295679 Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252 | ||||||||| | | | | ||| || | || || ||||| | |||||| |||| Sbjct 295678 GGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACC 295619 Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312 | || |||| ||| | | || |||||| || | || || ||||| ||| Sbjct 295618 AGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGT 295559 Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372 ||| || || ||||| |||| ||| || || || | ||||| || ||| ||| ||||| Sbjct 295558 TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTT 295499 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGT 38432 || | | | |||||| ||||||||||| |||||| || || ||||| || || Sbjct 295498 CATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGT 295439 Query 38433 AGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATC 38492 ||||| ||||| | || ||||| |||| | ||||||||||||| | | || Sbjct 295438 TGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCGCTTC 295379 Query 38493 TATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTAT 38552 || || | |||||| || || || | || ||||| | | |||||||| | ||| Sbjct 295378 GATGTCTCTGCCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGGC 295319 Query 38553 TATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACT 38612 | || | || | | |||| ||| || ||| || ||||| | ||||||||||| Sbjct 295318 CACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTGAAACCAAAATAACT 295259 Query 38613 ATA-TGAATAATCTCTATCGTA 38633 || || | ||||||| || || Sbjct 295258 GTACTGGA-AATCTCTGTCATA 295238 Score = 167 bits (184), Expect = 2e-36 Identities = 534/816 (65%), Gaps = 17/816 (2%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 ||||| | || ||||||| || ||||| || || || | ||| |||| |||||| Sbjct 297075 GATGCGGCTTGGGTTCTCAAGTAGTACATACCGGTCTTCAATCCCTTCTTCCACCCGTAA 297016 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933 ||||||||||| || || || | || || | | | | ||| ||| ||| Sbjct 297015 AAATGCATACTTGTTAGCTTACCCATAGTTGGGGCACGCAAGAACAAATTCAATGAATGA 296956 Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993 |||||| ||| | || | ||||||||||| | | ||| ||||| || || Sbjct 296955 GATTGATCGATATAAACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 296896 Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050 ||||| || ||||| |||| | || | | | ||| | || | ||| |||||| Sbjct 296895 TCCCAGACAGTTTTGTATAAATCCTTCAATTCTTGTGGAACATTTGGTAAACCTTGAATG 296836 Query 37051 GAACCATTATGTAACA-CAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACTTA 37108 || || || ||| | ||| | | | ||| || | | || ||| ||| | | | Sbjct 296835 GAGCCGTTCTGTGTAATCAAAT--ACTGTTTCATACCCTCATCCCAAATACCTAAATCAA 296778 Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 | || | | || || || || ||||| || || || || ||||| || | | | Sbjct 296777 CCAAATCGCGTAGTAAGTAAGGGTTCACAACTTGGAATTCACCGGATAAGACACGACGGG 296718 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 || |||||| ||| |||||||| | ||||||| || |||||||| || || | Sbjct 296717 AGTACATATTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGACGTGG 296658 Query 37229 ATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGT-ATTAATTC 37285 ||||||||||||||||||| || | ||| | |||| | ||||| | || | || Sbjct 296657 ATGCAGTAGGCATTGGTGCCATGGTCAAAGAGT--TTCTAATACCATGCTTCATGACATC 296600 Query 37286 T-CTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACC-ACATATCATA 37343 | | | ||| || ||||||||| | | || ||||| || || ||||||| | Sbjct 296599 TTCCCTCAAAGT--ATCCCAATCCCACATGCC-GTAGGGTTTTTGGTCCCACATATCGAA 296543 Query 37344 TTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTT 37403 || || ||||||| | ||||||||| | | | || || || ||||||| ||| Sbjct 296542 CTGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGTCCGTCCTTTTG 296483 Query 37404 AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 ||||||||| ||| || ||| | | ||||| ||| |||||||| || ||||| ||||| Sbjct 296482 AGCTAGTTCACAAGAAGCTTCCATAGAGGCATGATAAATTGTTTCAAAGATTTGGATATT 296423 Query 37464 TAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAA 37523 || || || ||||| ||| || | | | | || || || |||||||| Sbjct 296422 TAGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATGAAAGTGTCAGCCAA 296363 Query 37524 ACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCAC 37583 ||| |||||||| | | | || ||||||||| || |||| ||||| || |||| || Sbjct 296362 ACCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATCTTTTCGCTTCTTCAAC 296303 Query 37584 TGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 || || ||||| ||| || | | | |||| ||| Sbjct 296302 AGGGTAGTAATTACGATCAATAACTCTGTTTAAATT 296267 >seq10 Length=743843 Score = 149 bits (164), Expect = 6e-31 Identities = 397/601 (66%), Gaps = 22/601 (4%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| || || ||||| || || |||||||||||||| | || | ||| ||||| Sbjct 391448 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAG 391389 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || || |||||||||| |||| || || | ||| || || | || || ||||| Sbjct 391388 AAGGTCAAACCGGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCG 391329 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG 11800 || ||||| | || || | || ||||| || |||| |||||| ||| | | || Sbjct 391328 GAGAAGAAGACACCTTCGATAGAGGCAAAGGCGACTAGTCTTTCACCAAACAAGGCGTCA 391269 Query 11801 ----CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852 || || |||||| || ||||| || || |||| || ||| | || | Sbjct 391268 GCGTCTTGA-ATCCATCTTAGAGCCCACTCGGCCTTCTC----ACCGATTTCTGGGATGG 391214 Query 11853 TTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTAT 11910 | | || || || || || | ||| |||| || || | | || ||||| || Sbjct 391213 TGTGAATGGCATTGAACAA--GAATTCACTTTCCTTAGGGTCCTTGATGTAGGTATCGAT 391156 Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 || || || |||| |||||||||||||| || ||||| || |||||||||| Sbjct 391155 CAACAAGGAGTAGGTTTCAGAATGAATATTTTCAATCATGATTTGGAAACCATAGAAACT 391096 Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030 |||||||| | || || || | || |||| | || || ||||| ||||| Sbjct 391095 CTTTGCCTCTGGAACTTGAACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 391036 Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090 ||| ||| || || ||||| || || | ||||| || | |||| ||| || Sbjct 391035 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTAGAAATAAAAAATCTCTCGT-TTTCGT 390977 Query 12091 TAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | || |||| |||||||| | ||| || || ||||| | ||||||| ||||||| | Sbjct 390976 TCATTCTGTTATTCCAATCATGAATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGA 390917 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206 || || | | | ||||| || |||||| ||||| ||||| |||||||||| || Sbjct 390916 AAGAGGCTTCGGCACGCTTATAAGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAA 390857 Query 12207 C 12207 | Sbjct 390856 C 390856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524700438480