Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12 105 7e-18 >seq12 Length=1023116 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | || ||||| || | |||||| ||||| |||||||||||||| | Sbjct 60071 CCACCTCTCAATCTCAGCACTAAATGCAACGTAGATTCTTTCTGAATGTTATAATCAGAC 60130 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| || || ||||||||| | || || | ||| ||||| || || Sbjct 60131 AGTGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGG 60190 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || ||| | | || | ||||||| | || ||| Sbjct 60191 ATACCCTCTTTGTCTTGGATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 60250 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || || | ||||| || || ||||||||| Sbjct 60251 TCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCATA 60298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || ||||| ||||| || ||| || || || |||||| || || |||||| Sbjct 59873 GTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAGTTGCTTACCA 59932 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||| | || ||||| ||||| || ||||||||||| ||| |||||| || Sbjct 59933 GCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTGTC-CTGAATTTTTGACTT 59991 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | || ||||| | ||| | || || || |||| || Sbjct 59992 GACGTTATCAATAGTGTCAGACGATTCAACCTCGAGGGTTATGGTTTTACCCGTCAGTGT 60051 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 60052 CTTAACGAAAATCTGCATA 60070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || ||| || || || |||||| || || |||||| Sbjct 60557 GTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAGTTGCTTACCA 60616 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||| | |||||||| ||||| || ||||||||||| ||| |||||| || Sbjct 60617 GCAAAGATCAATCTCTGCTGATCTGGAGGAATACCTTCTTTGTC-CTGAATTTTTGACTT 60675 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | | || || || | || | || || |||||||| || Sbjct 60676 GACGTTATCAATAGTATCAGAAGATTCGACTTCCAATGTTATGGTTTTACCGGTCAAAGT 60735 Query 139747 TTTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 60736 CTTGACAAAAATTTGCATA 60754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063894586400