Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 230 6e-55 seq15 116 1e-20 >seq5 Length=565208 Score = 230 bits (254), Expect = 6e-55 Identities = 1037/1626 (64%), Gaps = 53/1626 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||| | ||||| ||| |||||||| |||| || || || ||||| ||| Sbjct 295421 TTTACTCATGCCTCTCCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCT 295480 Query 363607 TGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 || |||||| | |||||||| || || ||||||||||| | ||||| | || | Sbjct 295481 TG-TTTCTTGGTCGCCATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGA 295539 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | |||||||| | ||| || || |||||| || ||||| ||| ||||| | Sbjct 295540 ATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACATATCCATAATATTCGTTC 295599 Query 363726 ACAGAACAG----TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGC 363781 ||| | ||||||| || ||| || ||| || ||| | |||||||| Sbjct 295600 ----AACTGGTTCTTACATTGCTGGTACAAACGGTACCTCTAACGGGTTAATTCCCATGA 295655 Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGG 363839 ||||||| ||| | || || || | || |||||||||||||| | |||| | || Sbjct 295656 TTCGTGTTTTTAATAACACCGCCCGTTATGTCGACCAGGGTGGTAACAAAAGACC--TGG 295713 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCG 363899 || ||||| |||| || || || ||||| ||||||||||| ||| |||| || | Sbjct 295714 CGCCTTTGCCCTGTACCTGGAACCATGGCATGCTGATATTTTTGATTTTATTGATATCAG 295773 Query 363900 GAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 || ||| || ||||| ||| | |||||| | ||| |||| ||| || ||| || | Sbjct 295774 AAAGAACCACGGTAAAGAAGAAATTCGTGCAAGAGATTTGTTTCCTGCTCTATGGATTCC 295833 Query 363960 TGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 ||| | ||| |||||||| || || | | || |||| | | || | ||| | Sbjct 295834 TGATCTTTTCATGAAGCGTGTTGAAGAGAATGGGACTTGGACTTTGTTCTCTCCAACAGC 295893 Query 364020 ATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078 ||| ||||| ||| ||| | || ||||| | || |||||||| || | Sbjct 295894 CGCTCCTGGTCTAAGCGACTGT-TATGGCGACGAGTTTGAAGCTCTATATACCCGCTACG 295952 Query 364079 AATCGGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATG 364137 || | ||| | | | ||||||| ||| || || || |||||| | |||| || Sbjct 295953 AA----AAAGAAGGTCGTGGTAAGACCATTAAGGCTCAAAAATTATGGTATTCCATTTTG 296008 Query 364138 GATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAG 364197 || | || | ||| || || ||||| | | | | || || ||| | |||||| | ||| Sbjct 296009 GAAGCACAAACTGAAACGGGTACACCTTTTGTCGTTTATAAGGATGCTTGCAACAGAAAG 296068 Query 364198 TCCAACCAGCAGCACCTTGGT----ACAATTCAGCAGAGCAACCTATGTACCGAGATTAT 364253 || ||||| | || | ||| ||| ||| || ||| |||| || ||| | Sbjct 296069 TCTAACCAAAAAAACTTAGGTGTTATCAAGTCATCA----AACTTATGCTGTGAAATTGT 296124 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGC 364313 ||| ||| | ||||| ||||| ||||| || |||||| | || || | || | || || Sbjct 296125 TGAGTACTCAGCTCCGGACGAAACTGCTGTTTGTAACTTGGCTTCTGTTGCCTTGCCAGC 296184 Query 364314 GT---TTGTAA------AAGATGG---TACTTTTGACCACCAGCATC-----TTTATGAC 364356 | ||| || | || || |||| | || || | || ||| || Sbjct 296185 ATTCATTGAAACGTCAGAGGACGGCCAAACTTCT-ACATACAACTTCAAAAAATTA-CAC 296242 Query 364357 GTAA---CCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCA 364413 | || || | || |||| | ||| | ||| ||||| || ||||| || || Sbjct 296243 GAAATTGCCAAAGTTGTTACTCGTAATTTAAACAGAGTTATTGATCGTAATTACTACCCT 296302 Query 364414 ATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGC 364473 || ||||| | | || |||||| | ||| | || |||| | | ||||| || || Sbjct 296303 GTTGAAGAAGCGAAAAGATCCAATATGAGACATAGACCAATTGCTTTGGGTGTTCAAGGT 296362 Query 364474 CTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTA 364533 | |||||| ||| ||| |||| | | |||||||| || || ||| | ||| Sbjct 296363 TTGGCTGACACTTTCATGTTGCTACGTTTACCCTTTGATTCTGAAGAGGCCCGTTTACTA 296422 Query 364534 AATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCA 364593 |||| | |||||||||||||| ||| |||| | ||| ||||| ||||| | || Sbjct 296423 AATATCCAAATCTTTGAAACAATTTATCATGCCTCTATGGAAGCTTCTTGTGAACTAGCT 296482 Query 364594 AAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAG 364653 ||| | ||| ||| || | | || || || ||| || || | | | ||| Sbjct 296483 CAAAAGGACGGACCATACGAAACCTTCCAAGGTTCTCCAGCTTCTCAAGGTATACTTCAG 296542 Query 364654 TTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAAC 364713 || ||| | ||| | | || | | | ||| | |||||||| | | | Sbjct 296543 TTCGATATGTGGGACCAAAAACCCTACGGCATGTGGGATTGGGATACTTTGAGGGAAGAT 296602 Query 364714 GTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACT 364773 || | ||||||||||| | | ||||| | | || || ||||| || || || || Sbjct 296603 GTCATGAAGCATGGTATTAGAAACTCTTTGACCATGGCACCAATGCCTACTGCATCCACG 296662 Query 364774 GCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGC 364833 | || || | || | || || || || ||||| |||| |||| | || || || Sbjct 296663 TCCCAAATATTGGGTTATAATGAATGTTTTGAACCAGTTACCTCCAATATGTACTCCCGT 296722 Query 364834 CGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGAC 364893 || || | ||||| ||||| | || || || ||| || | ||| | || Sbjct 296723 CGTGTCTTATCCGGTGAATTCCAAGTTGTGAACCCTTACTTACTACGCGATTTGGTTGAT 296782 Query 364894 CGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAG 364953 || | |||| ||| | ||||| | ||| | || | || || || | || Sbjct 296783 TTAGGTATTTGGGATGAGGGTATGAAACAGTATTTGATTACACAGAACGGCTCCATTCAA 296842 Query 364954 AACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC- 365012 | ||| ||||| |||| ||||| | | |||||||| || ||||||||||| Sbjct 296843 GGTTTACCAAATGTTCCACAAGAATTGAAGGATTTATACAAAACTGTCTGGGAAATTTCA 296902 Query 365013 CATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTC 365072 || | ||| ||||| | ||||| |||||||| || || |||| ||| || || Sbjct 296903 CAAAAG-ACTATCATTAACATGGCAGCCGATCGTTCTGTTTATATCGATCAATCTCATTC 296961 Query 365073 GTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGG 365132 || || | ||| || | ||||| | ||||| ||| |||||||| ||||| Sbjct 296962 ATTGAATTTGTTCTTGCGTGCCCCAACTATGGGTAAGCTAACAAGTATGCATTTTTACGG 297021 Query 365133 GTGGAA 365138 |||||| Sbjct 297022 GTGGAA 297027 >seq15 Length=1078405 Score = 116 bits (128), Expect = 1e-20 Identities = 208/299 (70%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-G 111477 ||| || |||||||| || |||||||| ||||| | ||||||| || ||| || | | Sbjct 456504 TGTTAAGATTTGGGACGGTAATGGATCCCGTGAATATCTAGATA-AGATGGGGTTCACAG 456446 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 | | ||| || ||| | || || ||||| ||||| |||||| | || || || || Sbjct 456445 ATAGGAAAGTGGGGGATTTGGGGCCCGTTTATGGATTCCAATGGAGGCATTTCGGCGCTA 456386 Query 111538 ACTACAAAACC----ATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAAT 111593 | ||||| || ||| |||||| ||| | |||||| | ||||||||| || | Sbjct 456385 AATACAAGACGTGTGATG-ACGACT---ATGCTGGACAGGGTATTGATCAATTGAAGCAG 456330 Query 111594 GTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAAC 111653 |||||| || || | |||| || || | | | | |||||||||||||| ||||| Sbjct 456329 GTCATTCATAAACTAAAGACAAATCCTTATGATAGAAGAATTATTATGAGTGCTTGGAAT 456270 Query 111654 CCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT 111712 ||| || || || || ||||| | |||||||| || || | | || |||||||| Sbjct 456269 CCAGCTGATTTTGACAAGATGGCTTTGCCACCATGCCACATTTTCTCACAATTTTATGT 456211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353316113294