Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12 104 3e-17 >seq12 Length=1023116 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || ||| |||||||| || || || ||||| || ||||||| Sbjct 60070 ACCACCTCTCAATCTCAGCACTAAATGCAACGTAGATTCTTTCTGAATGTTATAATCAGA 60129 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || | |||| || || ||||||||||| || || |||| || || || | ||| Sbjct 60130 CAGTGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGG 60189 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||| ||||| ||| || ||||| ||| | | | |||||| ||||| | Sbjct 60190 GATACCCTCTTTGTCTTGGATCTTACTTTTGA-CGTTGTCAATAGTGTCGGAAGATTCAA 60248 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || || ||||| || ||||| || || ||||| |||||||| Sbjct 60249 CCTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 60297 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||| | ||||||||||| || || |||||||| || ||||| || | Sbjct 59842 ACCACCTCTTAGTCTTAACACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGA 59901 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || || ||||||||||| || || | || ||| || || | || Sbjct 59902 CAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGG 59961 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||||| ||| |||||| |||| | | | ||||| |||||| | Sbjct 59962 AATACCTTCTTTGTCC-TGAATTTTTGACTTGACGTTATCAATAGTGTCAGACGATTCAA 60020 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || |||||||| ||||| || ||||| || || || ||||| Sbjct 60021 CCTCGAGGGTTATGGTTTTACCCGTCAGTGTCTTAACGAAAATCTGCAT 60069 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||| | ||||||||||| || ||| ||||||||| || ||||| || | Sbjct 60526 ACCACCTCTTAGTCTTAACACCAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 60585 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || || ||||||||||| || || | || |||||| || | || Sbjct 60586 CAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGAGG 60645 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||||| ||| |||||| |||| | | | || || ||||| | Sbjct 60646 AATACCTTCTTTGTCC-TGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGA 60704 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || |||||||| || || | ||||| ||||| |||||||| Sbjct 60705 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 60753 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| ||||| || | || ||||||||||||||||| || | Sbjct 60298 ACCACCTCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGA 60357 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || || || |||||||| || || || | || ||| ||||| | || Sbjct 60358 TAACGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGG 60417 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | ||||| | | ||| |||| | |||| ||| | | | ||||||| ||||| Sbjct 60418 AATACCTTCCTTAT-CTTGAATTTTCGACTTGA-CGTTGTCAATCGTGTCGGAAGATTCG 60475 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || |||||||| |||||||| ||||| Sbjct 60476 ACCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 60525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| ||||| ||||| || |||||||| || ||||| |||| Sbjct 470262 ACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 470203 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | | || || | ||||||||||| || || | || || ||||| | ||| Sbjct 470202 CAGAGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 470143 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| || |||| | | | ||||| ||||| || Sbjct 470142 GATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 470083 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || || || || |||| ||||| || || |||||||| || Sbjct 470082 TTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 470032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212684567280