Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12 125 6e-24 seq5 86.0 6e-12 >seq12 Length=1023116 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || || || ||||||||||| ||||| || ||| | ||| || | Sbjct 60311 CTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTACCA 60370 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | ||||||| || ||||| || ||||| ||||| ||| Sbjct 60371 TCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTA 60430 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| |||| || | || | ||||||||||| ||||| || ||||||| Sbjct 60431 TCTTGAATTTTCGACTTGA-CGTTGTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAAT 60489 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || ||||| || ||||| Sbjct 60490 GGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 60525 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || || ||||| | ||| | || || ||||||||||| || || ||| | |||| || Sbjct 60536 AGTCTTAACACCAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTA 60595 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 || |||| ||| || || || | ||||||| ||||| || || ||||| |||||| Sbjct 60596 CCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGAGGAATACCTTCT 60655 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || ||||||||| |||| || | || | || || ||||| |||||||| | || Sbjct 60656 TTGTCCTGAATTTTTGACTTGA-CGTTATCAATAGTATCAGAAGATTCGACTTCCAATGT 60714 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| | ||| || |||||||||||||| Sbjct 60715 TATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 60753 Score = 118 bits (130), Expect = 1e-21 Identities = 186/264 (70%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || |||||||||||||| || || || | ||| | | Sbjct 470249 CTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTTCTGCCA 470190 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || ||||| || Sbjct 470189 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 470130 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || |||| || | ||||| ||||| || ||||| || |||| Sbjct 470129 TCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATA 470070 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC---GC---GCGACCAATTTAATAA 45359 || || ||||||| ||| || || |||||||||||| || || | || |||| || Sbjct 470069 GTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTGGCTTGTCGGCAAAATTAA-AA 470011 Query 45360 TTTAACTCTTATTTTCTTACTAAG 45383 ||||||| | |||||||| ||| Sbjct 470010 TTTAACTGCTTCTTTCTTACCAAG 469987 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| ||||| ||||| ||| ||||| || || || |||||||| | ||| || Sbjct 60083 CTCAGCACTAAATGCAACGTAGATTCTTTCTGAATGTTATAATCAGACAGTGTTCTACCG 60142 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | || | || ||| || || || || || || ||||| Sbjct 60143 TCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGGATACCCTCTTTG 60202 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || ||||| || | || | ||||||||||| || || || || || | Sbjct 60203 TCTTGGATCTTACTTTTGA-CGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTAT 60261 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||||||||| |||||||||||||| Sbjct 60262 AGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 60297 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || || ||||| | ||| | || |||||||||||||| || || ||| | |||| || Sbjct 59852 AGTCTTAACACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTA 59911 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 || |||| ||| || || || | ||||||| || || || || ||||| |||||| Sbjct 59912 CCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCT 59971 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || ||||||||| |||| || | || | ||||| || || || || ||||| || Sbjct 59972 TTGTCCTGAATTTTTGACTTGA-CGTTATCAATAGTGTCAGACGATTCAACCTCGAGGGT 60030 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || || || || || ||||| ||||| Sbjct 60031 TATGGTTTTACCCGTCAGTGTCTTAACGAAAATCTGCAT 60069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 ||| || || || || || || ||||||||||| ||||| || ||| | ||| | Sbjct 59626 CCTTAAGACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCC 59685 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| ||| || || || | ||||||| || ||||| || ||||| ||||| || Sbjct 59686 ATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTT 59745 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||| ||||| || || | || | || | ||||| || || || || ||||| || | Sbjct 59746 ATCCTGAATCTTGCTCTTCA-CGTTGTCAATAGTGTCAGACGATTCAACCTCGAGGGTTA 59804 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || ||||| || ||||| Sbjct 59805 TGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 59841 >seq5 Length=565208 Score = 86.0 bits (94), Expect = 6e-12 Identities = 206/312 (66%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 122832 GATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTC 122891 |||| | | |||| |||||||| | |||||| || ||| ||||| || |||| Sbjct 295247 GATTTCCAGTACAGTTATTTTGGTTTCAAAACTTTGGAACGTTCTTATTTACTAAGAATC 295306 Query 122892 GAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC 122951 | | | || ||||||||| ||||| | | ||| | ||||| | ||| | ||| Sbjct 295307 AACGGTCAAGTGGCCGAACGTCCACAACACTTAATTATGAGAGTCGCACTGGGCATCCAC 295366 Query 122952 GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACG 123011 || | ||||||||| || ||||| || | || ||||||| ||||| || || Sbjct 295367 GGCAGAGACATCGAAGCGGCTCTAGAAACATATAACTTAATGTCTCTAAAATACTTTACT 295426 Query 123012 CACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTT 123071 || || ||| |||||||| || || || ||||| |||| || ||||| Sbjct 295427 CATGCCTCTCCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTGTTTC 295486 Query 123072 TTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCG 123131 ||| || || || || ||| ||| ||||| || || |||||| || || || Sbjct 295487 TTGGTCGCCATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCT 295546 Query 123132 TTGATTTCCAAA 123143 |||||||||||| Sbjct 295547 TTGATTTCCAAA 295558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003103949320