Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9 161 1e-34 seq5 111 2e-19 >seq9 Length=443128 Score = 161 bits (178), Expect = 1e-34 Identities = 780/1226 (64%), Gaps = 32/1226 (3%) Strand=Plus/Plus Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975 ||| |||||| || ||| || | ||| | || || |||||||| | |||| | | Sbjct 233878 CATTCCACATGTCAAATTGTAGAATACCTTTAGAGGCTGGAGAACCTTCGAAAGTAGAAT 233937 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 || || || || ||||| || | || || || || | |||||||| || || | Sbjct 233938 ACTTACCTTCCTTCTGTGCCAATTCACAGGAGGCTTCAAGAGTAGCATGATAAATGGTTT 233997 Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAA 110095 | ||||| || |||| ||| ||||| | || || || |||| | | | Sbjct 233998 CGAAAATCTGTTTGTTCAAAGTTTGAGCTTCTTCTGATTCAAAAGGTAGACGCAACATCA 234057 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 || | ||| || ||||| |||||||| | |||| || | |||| |||| || || Sbjct 234058 TATAGGTATCGGCCAGACCTTGAACACCCAAGGCAATAGGTCTATGCCTCATATTTGAAT 234117 Query 110156 GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212 || || ||| || || ||| | || ||||||||||| | || | || | | Sbjct 234118 TTCTGGC---TTCAGGAACTGGATAATAATTACGGTCGATGACTCTGTTCAAGTTATGGG 234174 Query 110213 TCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCG-AAC-----GTTTT--CGTCTC 110264 | | || | |||||||| | | ||| ||| ||| ||||| | ||| Sbjct 234175 TAATGACTTTAGCAATTTCATGTAAACTCTCGAAATTATAACTTGCAGTTTTACCATCTT 234234 Query 110265 CTTA----TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGT 110320 | | | |||| || ||||| |||||||| || ||||| || || | || || | Sbjct 234235 CAGACATCTCGACAAATGCTGGGAGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCAT 234294 Query 110321 CTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGT 110380 || | | || || | ||||| |||||||||||| |||||| |||||||| Sbjct 234295 CTGGGGAAGAATACTCGACGATTTCACAACACAAGTTGGATGATTTAATGGTACCCAAGT 234354 Query 110381 TCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTT 110440 ||| || || | || ||| ||||| ||||| || | |||| | || ||||| |||| Sbjct 234355 TCTGTTGGTTTGTCTTTCTGTTACATGCGTCCTTGTAAACCATGAAAGGTGTACCTGTTT 234414 Query 110441 CCGTCTGTGACTTG-AGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCG 110499 | || |||| |||| | |||||| | ||||| | ||| | ||| ||| | Sbjct 234415 CTGTTTGTG-CTTGTAAAATGGCATACCATAACTTTTGGGCTTTAATGGTT---TTACCA 234470 Query 110500 AGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559 |||||||| ||||| ||| || | || |||||||| | || | |||||| Sbjct 234471 CGACCTTCCCTTTCGTAACGGGTATATAGCTCTTCAAATTCGTCACCCCAGACATCATCT 234530 Query 110560 AGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTC 110619 | ||| || |||| | || | | ||| ||| |||| | ||| | ||| Sbjct 234531 AAACCTGGGGCAGCACTGGGAGAAAATAAAGTCCAGGGACCATCCTCTTGAACACGTTTC 234590 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679 || || |||||||||||||||| || | ||| | || | |||| ||||| | | Sbjct 234591 ATAAAAAGGTCAGGAATCCACAGAGCAGGGAATAAATCCCTTGCACGAATTTCTTCTTTA 234650 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||| | | | || | |||||| | |||||| | |||||||||||| | | Sbjct 234651 CCATGGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCGTGCCATGGTTCCAAGAAA 234710 Query 110740 ACAGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795 | || | || || || | ||| | |||| ||||| || || || || Sbjct 234711 AGGGCAAAGGCACCAGGTCTCTTG-TTACCTCCTTGGTCCACATAACGAGCAGTATTGTT 234769 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACC-CCTAATTCTGG 110854 ||| || | | ||||||||| | |||| || ||| || ||||| | | | | Sbjct 234770 GAAAACACGAATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACCGGCGATATAAGA 234829 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 || | ||| ||| |||| || ||||| | ||||| |||||| || ||| ||| Sbjct 234830 ACCT-GTGGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTGGAAATCA 234888 Query 110915 GTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 ||||| ||| | | ||| |||||||||| ||||| || || |||| ||||||||| Sbjct 234889 TAGCACATTCTTTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTTCATGGCAATTA 234948 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 | || || |||||||| || || | || || || || || || | || || | || | Sbjct 234949 GGAAACATGAAGACATTTGGGGGTGTGGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGT 235008 Query 111035 GAATGAACAGACCTT-GGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTA 111093 || |||| | | ||| |||||| ||||| || | || | || | ||| || Sbjct 235009 GAGTGAA-ATATCTTAATGACATCAAATTGTAGGTCTTCAGCACAGAATCGATATCACTA 235067 Query 111094 CCGTGAATACCAATGGCAACTCGCAT 111119 ||||| ||||| | || || ||||| Sbjct 235068 CCGTGGATACCTAGCGCCACACGCAT 235093 >seq5 Length=565208 Score = 111 bits (122), Expect = 2e-19 Identities = 713/1137 (63%), Gaps = 24/1137 (2%) Strand=Plus/Minus Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTAC 109977 ||||||||||| ||||||| ||| | || ||| |||||||| | ||| | ||||| Sbjct 296556 TCCCACATATCGAACTGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTAT 296497 Query 109978 GACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCA 110037 | || || | || | || | ||||| || | | |||||||| || || ||| Sbjct 296496 GGTCCGTCCTTTTGAGCTAGTTCACAAGAAGCTTCCATAGAGGCATGATAAATTGTTTCA 296437 Query 110038 AAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATA 110097 || || || ||| | | || | ||||||| | || ||||| | || | || Sbjct 296436 AAGATTTGGATATTTAGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATG 296377 Query 110098 AACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGT 110157 || || || | ||| |||||||| | | |||| || | ||| |||| || || | | Sbjct 296376 AAAGTGTCAGCCAAACCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATCTT 296317 Query 110158 CGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACA 110217 || ||| || ||||| | || || || || || | || | ||| || ||| Sbjct 296316 TTCGCTTCTTCAACAGGGTAGTAATTACGATCAATAACTCTGTTTAAATTACGAGTAACA 296257 Query 110218 GTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGT-----TTT---CGTCTCCTTA- 110268 || | ||||| || | ||| | | | | | | || ||| |||| || | Sbjct 296256 ACTTTGGCAATTTCGTGTAATTTTTTGAAGTTGTATGTAGAAGTTTGGCCGTCCTCTGAC 296197 Query 110269 -TTGACATATTTG--GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 || || || || | |||| ||| || | || || |||| ||| ||||| Sbjct 296196 GTTTCAATGAATGCTGGCAAGGCAACAGAAGCCAAGTTACAAACAGCAGTTTCGTCCGGA 296137 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 | | ||| || | |||||| || ||||| || ||| || ||||| ||||| || Sbjct 296136 GCTGAGTACTCAACAATTTCACAGCATAAGTTTGATGACTTGATAACACCTAAGTTTTTT 296077 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || || || || |||||| ||||||||||| | | | || ||||| ||||| || Sbjct 296076 TGGTTAGACTTTCTGTTGCAAGCATCCTTATAAACGACAAAAGGTGTACCCGTTTCAGTT 296017 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCT 110505 |||| | | ||||| | ||||| | || | || ||| | ||||| Sbjct 296016 TGTGCTTCCAAAATGGAATACCATAATTTTTGAGCCTTAATGGTC---TTACCACGACCT 295960 Query 110506 TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGACC 110564 || | ||||| ||| || | | ||||| || | || || ||| || ||||| Sbjct 295959 TCTTTTTCGTAGCGGGTATATAGAGCTTCAAACTCGTCGCCATA-ACAGTCGCTTAGACC 295901 Query 110565 CTTCGCCT-TGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGA 110623 || ||| || | |||| | | |||| | ||| ||| ||||| | |||||||| Sbjct 295900 AGGAGCGGCTGTTGG-AGAGAACAAAGTCCAAGTCCCATTCTCTTCAACACGCTTCATGA 295842 Query 110624 ACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTT 110683 | || ||||||||||| | || | || | || | |||| ||||| | ||| | Sbjct 295841 AAAGATCAGGAATCCATAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGT 295782 Query 110684 GGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAG 110743 |||| | | || | ||| || | ||||| | ||||||||||| || || | | Sbjct 295781 GGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCATGGTTCCAGGTACAGGG 295722 Query 110744 CGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799 | | || || ||| | ||| |||||| ||||| || || ||| ||| || Sbjct 295721 CAAAGGCGCCAGGTCTTTTG-TTACCACCCTGGTCGACATAACGGGCGGTGTTATTAAAA 295663 Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTA 110859 || | | ||| ||||| | || | || ||| |||||||| ||| || | Sbjct 295662 ACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACCAGCAATGTAAGAACCA 295603 Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919 | | |||||| | |||||||| | |||||||||||| || || ||| ||| Sbjct 295602 GTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCA 295543 Query 110920 CACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979 || ||| | | || | |||||||| || || || || |||| |||| | | || Sbjct 295542 CATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAA 295483 Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 ||||| ||||| ||||| || || || ||||| || | || || | |||||| Sbjct 295482 CAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGTTGGAGAGGCATGA 295426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975874842600