Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03-
21] 17 sequences; 12,092,810 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq9 221 1e-52
seq10 219 5e-52
seq5 167 3e-36
>seq9
Length=443128
Score = 221 bits (244), Expect = 1e-52
Identities = 553/839 (66%), Gaps = 3/839 (0%)
Strand=Plus/Plus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|| || ||||| ||||||||||| || || |||| ||| || ||| | | |||
Sbjct 234258 AGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATACTCGACGATT 234317
Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996
||| ||| | || |||| || |||||||| || || || || | |||||
Sbjct 234318 TCACAACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTGTTA 234377
Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056
|||||||||||||||| ||| |||||||| || |||||| | || | || | || |
Sbjct 234378 CATGCGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATGGCA 234437
Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116
| ||| | | | | | ||||| | | | || | | || |||||| |||
Sbjct 234438 TACCATA-ACTTTTGGGCTTTA--ATGGTTTTACCACGACCTTCCCTTTCGTAACGGGTA 234494
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176
|||| || |||||||| || || | |||| |||||| || || || | ||| |
Sbjct 234495 TATAGCTCTTCAAATTCGTCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAA 234554
Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236
| || | ||| |||| | || || | ||||||| | || || ||||| |||
Sbjct 234555 AATAAAGTCCAGGGACCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGA 234614
Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296
|| ||||||||||| | | | |||||| || ||| | || ||| || | |
Sbjct 234615 GCAGGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTCTAATATCGACA 234674
Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356
||||| | ||||| || ||||||||||| || | | || | |||| |||| ||
Sbjct 234675 AAGTCGAAGATATCTGCGTGCCATGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTG 234734
Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416
||||||||||| || | ||| | ||||||||||| |||| | | ||| || | |
Sbjct 234735 TTACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 234794
Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476
|||||||| |||| ||||| || | |||||| || | | | || || ||||
Sbjct 234795 CCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 234854
Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536
|| ||| | ||||||||| | || || || | |||||| ||| | |||||||||
Sbjct 234855 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 234914
Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596
|| ||||| ||| ||||| |||| | ||| ||||| ||||||||| || ||
Sbjct 234915 ATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGT 234974
Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656
||| || | |||||||| ||||| || || ||| | || || | ||| | |||
Sbjct 234975 GGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAA 235034
Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715
|| || || | | |||||||| ||||| | || ||||||| | ||||||||
Sbjct 235035 TTGTAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCTAGCGCCACACGCAT 235093
>seq10
Length=743843
Score = 219 bits (242), Expect = 5e-52
Identities = 600/912 (66%), Gaps = 9/912 (1%)
Strand=Plus/Minus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| || || | ||||| ||||||||||| || || || || | || || || |
Sbjct 391730 TTTTGGTAATCAGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 391671
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| || || || |||| || || || ||| ||| || || | | |
Sbjct 391670 TCCATAAAGTCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCAAAGGCGACCAAA 391611
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || || || | || ||| |||||| | ||| ||||| |||| ||
Sbjct 391610 AGTCTGTCAGCAACGAACTCAACGTATTGGTTCATTAGGTCAGCGTTCATACCTAGCAAG 391551
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907
||| || | ||||| ||||| | |||| |||| || | || ||||| | | ||
Sbjct 391550 GCAACTGGCAAGGCATCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 391493
Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967
| | |||| | || | || || | ||| |||| ||| |||||||
Sbjct 391492 TTTTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 391433
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
| || || | || |||||||| | |||||||| ||||| || || ||||| ||||
Sbjct 391432 AGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCGGGCA 391373
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087
||| ||||| || || |||||||| || || || || || || || ||||| | |||||
Sbjct 391372 TCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGACACCTT 391313
Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146
| | | ||||| || ||||||||||| ||| ||| | || ||| | |||||||||
Sbjct 391312 CGATAGAGGCAAAGGCGACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 391254
Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206
| || ||||| || ||||||| | ||| || || | || | ||| || |
Sbjct 391253 CTTAGAGCCCACTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAG 391194
Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266
| || || | | || || | || | ||| ||||| || ||| |||| |||
Sbjct 391193 AATTCACTTTCCTTAGGGTCCTTGATGTAGGTATCGATCAACAAGGAGTAGGTTTCAGAA 391134
Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326
||||||||||| || || || || || || |||| |||| |||| | || |||
Sbjct 391133 TGAATATTTTCAATCATGATTTGGAAACCATAGAAACTCTTTGCCTCTGGAACTTGAACT 391074
Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386
|| | | || |||| ||||| ||||||||||| || || ||| ||| || |||||
Sbjct 391073 TCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAG 391014
Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTA 19443
|| | || ||||||| | | || | | | | | | |||||||||||| |
Sbjct 391013 GCAAGAACTCTAGAAATAAAAAATCTCTCGTTTTCGTTCATTCTGTTATTCCAATCATGA 390954
Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503
||||| ||||| ||||| | ||||||| | ||||| ||||| || || || |||||
Sbjct 390953 ATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAGGCTTCGGCACGCTTATAA 390894
Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563
| ||| || ||| | || | ||||| || | |||| ||| | || | || ||
Sbjct 390893 GCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTTTCCTTGTCCTCATTC 390834
Query 19564 AGAATAGGTTCC 19575
| | |||||||
Sbjct 390833 AACAAAGGTTCC 390822
>seq5
Length=565208
Score = 167 bits (184), Expect = 3e-36
Identities = 719/1130 (64%), Gaps = 40/1130 (4%)
Strand=Plus/Minus
Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017
|||||| ||| || |||| || ||| |||| || || ||||| |||| | |
Sbjct 296097 TTGATAACACCTAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCCTTATAAACGACA 296038
Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077
|||||||| || ||||| | || | ||| | || || | ||| | | ||||||
Sbjct 296037 AAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATACCATAATTTTTGAGCCTTA 295978
Query 48078 ATAACAGCTCT-AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136
|| | ||| | | | || | |||||| ||||||| ||||| || ||
Sbjct 295977 AT----GGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATATAGAGCTTCAAACTCGTC 295922
Query 48137 CCCATACACATTATCTAAC-CCAGGACATTCATTAGGACACATCAATGACCAATCCTCAT 48195
||||| ||| | || | |||||| | | ||| | | ||| | |||| | |||
Sbjct 295921 GCCATA-ACAGTCGCTTAGACCAGGAGCGGCTGTTGGAGAGAACAAAGTCCAAGTCCCAT 295863
Query 48196 CATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG 48255
| || || | |||| || | ||| || ||||| ||||| ||| ||||| || |
Sbjct 295862 TCTCTTCAACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGAAACAAATCTCTTG 295803
Query 48256 TTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCAT 48315
| | |||||| || || ||| || | | |||| ||| || | ||||||||||
Sbjct 295802 CACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCAT 295743
Query 48316 GCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATAT 48375
|||||||||| | || | || | | || |||| ||| ||||| || || || | ||
Sbjct 295742 GCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACAT 295683
Query 48376 ATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGG 48435
| | ||| || || ||| |||| | | ||| || | | || || || |||| || |
Sbjct 295682 AACGGGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTG 295623
Query 48436 TTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTG 48495
| || | ||| ||| ||| | | | |||||| || | ||| |||||||| |
Sbjct 295622 TACCAGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAG 295563
Query 48496 CCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCAT 48555
| |||| || || | |||||| ||| | || || ||||| || || ||| || |
Sbjct 295562 CAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCT 295503
Query 48556 CTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATA 48615
| |||| | | |||||| |||||||| || | ||| || | |||||| |
Sbjct 295502 CCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACA 295443
Query 48616 ATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAG 48675
| |||||||| |||||| |||| |||| || | || ||||||||||| | | | |
Sbjct 295442 AAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCG 295383
Query 48676 AATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTT 48735
|| || || | || || || | | || | ||| | | | ||| || | ||
Sbjct 295382 CTTCGATGTCTCTGCCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTT 295323
Query 48736 CAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAAT 48795
| | | || || ||| | | | ||| || |||||| ||||| ||||||||||
Sbjct 295322 CGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTGAAACCAAAAT 295263
Query 48796 AGTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTA 48854
| |||| || ||| || | |||| | ||||| || |||| | | ||||| | |||
Sbjct 295262 AACTGTACTGGAAA-TCTCTGTCATAGACAATTGCAGAGTTTAATTTATCCTTGT-TTTC 295205
Query 48855 TAT-ACTACATCCATTACATTTTTTGATATAAT-------TGATT-----------CCTT 48895
|| || | || |||| | || || || | || | ||
Sbjct 295204 CATGACAATATTGTAGACATCGTCAGAAATCATGGGAGCGGGCTTACCAGTAGCGGCGTT 295145
Query 48896 G---------TAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAG 48946
| ||||||||||| ||||| | | |||| ||| | |||| |||||| |
Sbjct 295144 GACGTATCTATAAAGATCTTCGACAACTTTAGAAAATTGTTTCGTAGTTTGTTTATGTAA 295085
Query 48947 ATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT 49006
|||||| || | || ||||||||||| |||| ||||||||||||| || || |||||
Sbjct 295084 ATTAGAAATGGCGATCCTAGCAGCTAAGGTAGCGTAATCTGGATGAACAGTGGT-CATGT 295026
Query 49007 AC-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCT 49055
|| | || ||||||| ||||| | |||| ||| | || || ||||||
Sbjct 295025 ACGCACATGTTTCTGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCT 294976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108680551880
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