Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 221 1e-52 seq10 219 5e-52 seq5 167 3e-36 >seq9 Length=443128 Score = 221 bits (244), Expect = 1e-52 Identities = 553/839 (66%), Gaps = 3/839 (0%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || ||||| ||||||||||| || || |||| ||| || ||| | | ||| Sbjct 234258 AGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATACTCGACGATT 234317 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||| | || |||| || |||||||| || || || || | ||||| Sbjct 234318 TCACAACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTGTTA 234377 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 |||||||||||||||| ||| |||||||| || |||||| | || | || | || | Sbjct 234378 CATGCGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATGGCA 234437 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | | | | ||||| | | | || | | || |||||| ||| Sbjct 234438 TACCATA-ACTTTTGGGCTTTA--ATGGTTTTACCACGACCTTCCCTTTCGTAACGGGTA 234494 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| || |||||||| || || | |||| |||||| || || || | ||| | Sbjct 234495 TATAGCTCTTCAAATTCGTCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAA 234554 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | || | ||| |||| | || || | ||||||| | || || ||||| ||| Sbjct 234555 AATAAAGTCCAGGGACCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGA 234614 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||||| | | | |||||| || ||| | || ||| || | | Sbjct 234615 GCAGGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTCTAATATCGACA 234674 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||||| | ||||| || ||||||||||| || | | || | |||| |||| || Sbjct 234675 AAGTCGAAGATATCTGCGTGCCATGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTG 234734 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 ||||||||||| || | ||| | ||||||||||| |||| | | ||| || | | Sbjct 234735 TTACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 234794 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 |||||||| |||| ||||| || | |||||| || | | | || || |||| Sbjct 234795 CCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 234854 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 || ||| | ||||||||| | || || || | |||||| ||| | ||||||||| Sbjct 234855 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 234914 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| ||| ||||| |||| | ||| ||||| ||||||||| || || Sbjct 234915 ATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGT 234974 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || | |||||||| ||||| || || ||| | || || | ||| | ||| Sbjct 234975 GGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAA 235034 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 || || || | | |||||||| ||||| | || ||||||| | |||||||| Sbjct 235035 TTGTAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCTAGCGCCACACGCAT 235093 >seq10 Length=743843 Score = 219 bits (242), Expect = 5e-52 Identities = 600/912 (66%), Gaps = 9/912 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | ||||| ||||||||||| || || || || | || || || | Sbjct 391730 TTTTGGTAATCAGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 391671 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| || || || |||| || || || ||| ||| || || | | | Sbjct 391670 TCCATAAAGTCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCAAAGGCGACCAAA 391611 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 391610 AGTCTGTCAGCAACGAACTCAACGTATTGGTTCATTAGGTCAGCGTTCATACCTAGCAAG 391551 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| || | ||||| ||||| | |||| |||| || | || ||||| | | || Sbjct 391550 GCAACTGGCAAGGCATCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 391493 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| ||| ||||||| Sbjct 391492 TTTTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 391433 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||| | |||||||| ||||| || || ||||| |||| Sbjct 391432 AGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCGGGCA 391373 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| || || |||||||| || || || || || || || ||||| | ||||| Sbjct 391372 TCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGACACCTT 391313 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| || ||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 391312 CGATAGAGGCAAAGGCGACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 391254 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | || ||||| || ||||||| | ||| || || | || | ||| || | Sbjct 391253 CTTAGAGCCCACTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAG 391194 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | || || | | || || | || | ||| ||||| || ||| |||| ||| Sbjct 391193 AATTCACTTTCCTTAGGGTCCTTGATGTAGGTATCGATCAACAAGGAGTAGGTTTCAGAA 391134 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 ||||||||||| || || || || || || |||| |||| |||| | || ||| Sbjct 391133 TGAATATTTTCAATCATGATTTGGAAACCATAGAAACTCTTTGCCTCTGGAACTTGAACT 391074 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | | || |||| ||||| ||||||||||| || || ||| ||| || ||||| Sbjct 391073 TCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAG 391014 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTA 19443 || | || ||||||| | | || | | | | | | |||||||||||| | Sbjct 391013 GCAAGAACTCTAGAAATAAAAAATCTCTCGTTTTCGTTCATTCTGTTATTCCAATCATGA 390954 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 ||||| ||||| ||||| | ||||||| | ||||| ||||| || || || ||||| Sbjct 390953 ATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAGGCTTCGGCACGCTTATAA 390894 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563 | ||| || ||| | || | ||||| || | |||| ||| | || | || || Sbjct 390893 GCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTTTCCTTGTCCTCATTC 390834 Query 19564 AGAATAGGTTCC 19575 | | ||||||| Sbjct 390833 AACAAAGGTTCC 390822 >seq5 Length=565208 Score = 167 bits (184), Expect = 3e-36 Identities = 719/1130 (64%), Gaps = 40/1130 (4%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 |||||| ||| || |||| || ||| |||| || || ||||| |||| | | Sbjct 296097 TTGATAACACCTAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCCTTATAAACGACA 296038 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| || ||||| | || | ||| | || || | ||| | | |||||| Sbjct 296037 AAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATACCATAATTTTTGAGCCTTA 295978 Query 48078 ATAACAGCTCT-AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136 || | ||| | | | || | |||||| ||||||| ||||| || || Sbjct 295977 AT----GGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATATAGAGCTTCAAACTCGTC 295922 Query 48137 CCCATACACATTATCTAAC-CCAGGACATTCATTAGGACACATCAATGACCAATCCTCAT 48195 ||||| ||| | || | |||||| | | ||| | | ||| | |||| | ||| Sbjct 295921 GCCATA-ACAGTCGCTTAGACCAGGAGCGGCTGTTGGAGAGAACAAAGTCCAAGTCCCAT 295863 Query 48196 CATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG 48255 | || || | |||| || | ||| || ||||| ||||| ||| ||||| || | Sbjct 295862 TCTCTTCAACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGAAACAAATCTCTTG 295803 Query 48256 TTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCAT 48315 | | |||||| || || ||| || | | |||| ||| || | |||||||||| Sbjct 295802 CACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCAT 295743 Query 48316 GCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATAT 48375 |||||||||| | || | || | | || |||| ||| ||||| || || || | || Sbjct 295742 GCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACAT 295683 Query 48376 ATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGG 48435 | | ||| || || ||| |||| | | ||| || | | || || || |||| || | Sbjct 295682 AACGGGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTG 295623 Query 48436 TTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTG 48495 | || | ||| ||| ||| | | | |||||| || | ||| |||||||| | Sbjct 295622 TACCAGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAG 295563 Query 48496 CCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCAT 48555 | |||| || || | |||||| ||| | || || ||||| || || ||| || | Sbjct 295562 CAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCT 295503 Query 48556 CTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATA 48615 | |||| | | |||||| |||||||| || | ||| || | |||||| | Sbjct 295502 CCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACA 295443 Query 48616 ATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAG 48675 | |||||||| |||||| |||| |||| || | || ||||||||||| | | | | Sbjct 295442 AAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCG 295383 Query 48676 AATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTT 48735 || || || | || || || | | || | ||| | | | ||| || | || Sbjct 295382 CTTCGATGTCTCTGCCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTT 295323 Query 48736 CAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAAT 48795 | | | || || ||| | | | ||| || |||||| ||||| |||||||||| Sbjct 295322 CGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTGAAACCAAAAT 295263 Query 48796 AGTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTA 48854 | |||| || ||| || | |||| | ||||| || |||| | | ||||| | ||| Sbjct 295262 AACTGTACTGGAAA-TCTCTGTCATAGACAATTGCAGAGTTTAATTTATCCTTGT-TTTC 295205 Query 48855 TAT-ACTACATCCATTACATTTTTTGATATAAT-------TGATT-----------CCTT 48895 || || | || |||| | || || || | || | || Sbjct 295204 CATGACAATATTGTAGACATCGTCAGAAATCATGGGAGCGGGCTTACCAGTAGCGGCGTT 295145 Query 48896 G---------TAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAG 48946 | ||||||||||| ||||| | | |||| ||| | |||| |||||| | Sbjct 295144 GACGTATCTATAAAGATCTTCGACAACTTTAGAAAATTGTTTCGTAGTTTGTTTATGTAA 295085 Query 48947 ATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT 49006 |||||| || | || ||||||||||| |||| ||||||||||||| || || ||||| Sbjct 295084 ATTAGAAATGGCGATCCTAGCAGCTAAGGTAGCGTAATCTGGATGAACAGTGGT-CATGT 295026 Query 49007 AC-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCT 49055 || | || ||||||| ||||| | |||| ||| | || || |||||| Sbjct 295025 ACGCACATGTTTCTGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCT 294976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108680551880