Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 141 5e-29 seq9 120 2e-22 >seq5 Length=565208 Score = 141 bits (156), Expect = 5e-29 Identities = 315/473 (67%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||| |||| ||| |||| |||| | ||||| || ||| || | ||| |||| Sbjct 295889 TTGGAGAGAACAAAGTCCAAGTCCCATTCTCTTCAACACGCTTCATGAAAAGATCAGGAA 295830 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | ||| ||| |||||||| || | ||||||||||| ||||| |||||| | | Sbjct 295829 TCCATAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGA 295770 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 ||| | |||||||||||||| | ||||||||||| | || | ||||| || Sbjct 295769 TATCAATAAAATCAAAAATATCAGCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAG 295710 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 |||||| ||||| || || || || | || || | ||| ||||| | ||| | Sbjct 295709 GTCTTTTGTTACCACCCTGGTCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGG 295650 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 ||| ||| || | || |||||||| | | ||| | || || || || | ||||| Sbjct 295649 GAATTAACCCGTTAGAGGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATAT 295590 Query 26190 CGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTG 26249 || ||| | ||| || |||||||| ||| ||||| ||||| ||| | | Sbjct 295589 TATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAG 295530 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 | ||| |||| || | || || | ||||| | | || |||||||| || | || Sbjct 295529 TGTCGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTT 295470 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | || || | |||||| || || || | ||||||||| | ||| Sbjct 295469 GAGGTTTTGGAGTACCAGCATTAAACAAAGTTGGAGAGGCATGAGTAAAGTAT 295417 >seq9 Length=443128 Score = 120 bits (132), Expect = 2e-22 Identities = 285/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | || |||||||||| ||| |||||||| || || | ||||||||||| Sbjct 234590 CATAAAAAGGTCAGGAATCCACAGAGCAGGGAATAAATCCCTTGCACGAATTTCTTCTTT 234649 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || | ||| | | ||| | || || || ||||||| |||||||||||| || | Sbjct 234650 ACCATGGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCGTGCCATGGTTCCAAGAA 234709 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 | ||||| ||| ||| || || ||||| || || || | ||||| | || Sbjct 234710 AAGGGCAAAGGCACCAGGTCTCTTGTTACCTCCTTGGTCCACATAACGAGCAGTATTGTT 234769 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 |||||| | ||| |||| || ||| ||||| ||||| || | || | || Sbjct 234770 GAAAACACGAATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACCGGCGATATAAGA 234829 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 ||||| || | || | || | ||||| ||| | ||||| || || ||||| Sbjct 234830 ACCTGTGGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTGGAAATCAT 234889 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||||| ||| | ||||| |||| |||| || ||| | ||||| | | || Sbjct 234890 AGCACATTCTTTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTTCATGGCAATTAG 234949 Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352 ||||| ||||| | ||| | || | || || | |||||||| || || | ||| || Sbjct 234950 GAAACATGAAGACATTTGGGGGTGTGGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTG 235009 Query 26353 AGTATAATATC 26363 ||| |||||| Sbjct 235010 AGTGAAATATC 235020 Score = 95.1 bits (104), Expect = 6e-15 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 ||||||||| | |||||| |||||||| |||| ||| | ||||||||||| || || || Sbjct 233726 GTTTGAAGTCACTGGTTCGAAACATTCGTTATATCCAAGAATTTGAGAAGTTGAGGCAGT 233785 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||||||| || ||| | || ||||| || |||| ||| ||||| || | | |||| Sbjct 233786 TGGCATTGGCGCCATTGTCAAAGAGTTTCTTAATCCATGTTTGACAATGTCCTTTCTTAA 233845 Query 25168 TTTATCCCAATC 25179 | |||||||| Sbjct 233846 GGTTTCCCAATC 233857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039947573275