Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 152 2e-31 seq5 147 6e-30 seq13 113 1e-19 seq4 104 7e-17 seq15 93.3 1e-13 >seq9 Length=443128 Score = 152 bits (168), Expect = 2e-31 Identities = 222/311 (71%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || || || ||||| |||||||| || ||||| |||| | ||||||||| | Sbjct 234735 TTACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 234794 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||||| || ||||| ||| |||| ||||| | || || | || | |||| Sbjct 234795 CCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 234854 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || || |||| |||||||| || ||||| ||| ||||| || | ||||| || Sbjct 234855 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 234914 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 |||||||||||||| ||||| | ||| | | ||| | || ||| | ||| || || Sbjct 234915 ATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGT 234974 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA-CTTATTAGACATATA 156358 || || |||||||| |||| || || | || ||| | ||||| |||| | ||||| | Sbjct 234975 GGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAAT-GACATCAA 235033 Query 156359 ATCGTATGTCT 156369 || ||| |||| Sbjct 235034 ATTGTAGGTCT 235044 >seq5 Length=565208 Score = 147 bits (162), Expect = 6e-30 Identities = 501/775 (65%), Gaps = 12/775 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTC 155644 ||| ||| |||| ||||| || ||||| || | || |||| || || ||||| || Sbjct 296174 CAACAGAAGCCAAGTTACAAACAGCAGTTTCGTC--CGGAGCTGAGTACTCAACAATTTC 296117 Query 155645 ACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACA 155704 |||||| | ||| || |||||| ||||| || || |||||||| || ||||| || Sbjct 296116 ACAGCATAAGTTTGATGACTTGATAACACCTAAGTTTTTTTGGTTAGACTTTCTGTTGCA 296057 Query 155705 AGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG 155764 ||||||||| || | | | || || || || || | ||||| |||| ||| Sbjct 296056 AGCATCCTTATAAACGACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATA 295997 Query 155765 CCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATA 155824 ||| | | | || ||||| ||| | ||||| || || |||| Sbjct 295996 CCATAATTTTTGAGCCTTAATGGTCTTACCA---CGACCTTCTTTTTCGTAGCGGGTATA 295940 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG-GCACTTATCGGGGCAAA 155883 || | | | || || || ||||| || || || ||||| || | | || | | | Sbjct 295939 TAGAGCTTCAAACTCGTCGCCATAACAGTCGCTTAGACCAGGAGCGGCTGTTGGAG-AGA 295881 Query 155884 ACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 ||| | |||| | ||| | ||||||| ||| || | |||| ||| | || Sbjct 295880 ACAAAGTCCAAGTCCCATTCTCTTCAACACGCTTCATGAAAAGATCAGGAATCCATAGAG 295821 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 || || | || ||||| || || | ||||| ||||| | | || | | Sbjct 295820 CAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAA 295761 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG- 156062 | || |||||||| ||| ||| ||||| |||| ||||| ||| || ||| Sbjct 295760 AATCAAAAATATCAGCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGT 295701 Query 156063 --CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 |||||||| || ||||| || || || ||||| || |||| | ||| ||||| | | Sbjct 295700 TACCACCCTGGTCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGGGAATTAACC 295641 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | || || || || || || || ||| | ||||||| ||| |||| |||||| |||| Sbjct 295640 CGTTAGAGGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATATTATGGATAT 295581 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 |||| ||||||||||| | ||| ||||| ||| ||||| || | ||| | | ||| Sbjct 295580 GTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAA 295521 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 |||| || ||||| || || | ||| | | | | || || | ||||||| || Sbjct 295520 TACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTG 295461 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 | || ||||| || || | || || | |||||| |||| || || |||||| Sbjct 295460 GAGTACCAGCATTAAACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACAT 295406 >seq13 Length=941477 Score = 113 bits (124), Expect = 1e-19 Identities = 209/306 (68%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||| ||||| ||||||| | ||||||| || | ||||||| ||| || || | Sbjct 431024 CCTGTCAAATCTACCAGGTCTTAGTAATGCTTTATCGAGAATATCGGGTCTATTGGTACC 431083 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || || ||||||| | |||| | | |||| |||||||| | ||| || ||||| Sbjct 431084 AGCTAAGACAACAACATGGTCGGCTGGAGTAAAACCATCCATTTCTACTAACATCTGATT 431143 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || || | || || ||||| || | |||| ||| |||| | ||| ||| Sbjct 431144 CAGCGTATTCTCTCTCTCATCGTTGGCACCTGAAAAATTACCCTTTTG---CCTAGCTTT 431200 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | ||| |||||||||||||| || | | | || | |||| ||| ||| | Sbjct 431201 CCCTATAGCGTCAATTTCGTCAATAAACACAATCGAAGGTGCGTTTTCTCTTGCAGTCTT 431260 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||||||| | | || |||| ||||||| |||||||||||||||| ||| | Sbjct 431261 AAACAAATCTCTTACTCTTGCAGCACCAACACCAACAAACATTTCTACAAATTCTGAACC 431320 Query 289149 GGATAC 289154 ||| || Sbjct 431321 GGAAAC 431326 >seq4 Length=1477988 Score = 104 bits (114), Expect = 7e-17 Identities = 135/186 (73%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 301767 TAAATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAAT 301826 ||| |||| ||| | || ||| | || |||||| | | | || |||||| | | Sbjct 208380 TAAGTAAACAGTCAAAGAAGGAGTTTTCATGTTTTTGGCCACATTCAAAATTTCCTTTAA 208439 Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 ||||||||||||| || || || |||||| |||||||||||||| ||||| ||||| Sbjct 208440 ACGGGGAACACCAGAAGTAACTTT---CTTGGAAGCAACACCAGCAAAATGGAAGGTATT 208496 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946 || || | ||| |||| ||| |||||||| ||| || || | | |||||||||||| Sbjct 208497 AAGTGTCATTTGTGTAGCTGGTTCACCAATGGATTGGGCTGCTAGAACACCAACCATTTC 208556 Query 301947 TCCTGG 301952 || || Sbjct 208557 ACCAGG 208562 Score = 104 bits (114), Expect = 7e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| ||| |||| ||| | ||| || ||||| | | || | ||||||||| Sbjct 209167 TTTCTTGTGGTGTTATCGTAATGGACCATGATATCTTCTAGAGCTTTCACTAAACGACGT 209226 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| || |||||| || || ||||| || ||||| ||||||||||| Sbjct 209227 TGAATATAACCTGTTTCAGCTGTTTTGACGGCGGTATCGATAAGACCTTCACGACCACCC 209286 Query 302659 ATAGCATGGAAGAATAGCTCTT 302680 || || |||||||| | ||||| Sbjct 209287 ATTGCGTGGAAGAAAAACTCTT 209308 >seq15 Length=1078405 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| | ||||| | |||||| | |||||||||||| | | |||||||||||| | Sbjct 707592 AGCACCATAGGCAATTACACAATCTCTTTCCATTTCACCCAACCTCAGACCACCATCTCT 707651 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 || ||||||| | |||||| || ||||||| |||||||| |||| | | Sbjct 707652 GGATCTACCCTCAGTAGGTTGACGTGTCAAAACAGCCCTTGGACCACGAGCTCTTGCGTG 707711 Query 233392 AATTTTATCTTTAACCATATGCTTCA 233417 || |||||| |||||||||||||| Sbjct 707712 CATCTTATCTAAAACCATATGCTTCA 707737 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| | |||||||||| |||||||| || ||||| ||||| | || || | Sbjct 596563 TGGGCAACAGTCATACGAGATGGAATAGCGTGAGGATTAATGATTAAATCCGGAACAATA 596622 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || || || || |||||||| || || | ||| || | |||||||| |||||||| Sbjct 596623 CCTTCTGCTGTAAATGGCATATC-TTCTCTACGATATGTGATACCAATAGTACCCTTTTG 596681 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| || || |||||||| Sbjct 596682 ACCGTGACGAGAGGCAAATTTGTCACCAAT 596711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817279419729