Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 158 3e-33 seq5 156 1e-32 seq4 132 1e-25 >seq9 Length=443128 Score = 158 bits (174), Expect = 3e-33 Identities = 406/614 (66%), Gaps = 21/614 (3%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| ||| | || ||| | ||||| || | | || || || | Sbjct 235174 TATTTTGGGTTCAAGACTTTGGAGCGTTCGTATTTGCTAAGACTGAACGGTGAAGTGGCA 235115 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || || ||| || || | ||||| ||| | ||||| || || |||||| | Sbjct 235114 GAACGGCCACAGCACTTGGTTATGCGTGTGGCGCTAGGTATCCACGGTAGTGATATCGAT 235055 Query 110424 GCTGTTATTGAATGTTA-----TGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACT 110477 |||| | | || |||||| |||||| | | | | ||| ||| | Sbjct 235054 TCTGTGCTGAAGACCTACAATTTGATGTCATTAAG-----ATATTTC-ACTCACGCTTCC 235001 Query 110478 CCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA 110537 || ||| |||||||||| || ||| ||| || |||| || || || | | Sbjct 235000 CCAACCTTATTTAACGCTGGTACTCCACACCCCCAAATGTCTTCATGTTTCCTAATTGCC 234941 Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || || ||||| ||||||||||||||||||||| || | |||||| |||| | ||||| Sbjct 234940 ATGAAGGATGACTCTATTGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCC 234881 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 || | | || || ||||| |||| || | | || || || | ||| | ||||| Sbjct 234880 AAGACTGCAGGTGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATC 234821 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 || | || ||| |||||| ||| | |||| ||| | | || |||||| | ||| Sbjct 234820 GCCGGTACCAACGGTACTTCAAATGGGTTGATTCCTATGATTCGTGTTTTCAACAATACT 234761 Query 110718 GCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 || |||||| | ||||| ||| |||||| ||| | ||||| | | | ||| Sbjct 234760 GCTCGTTATGTGGACCAAGGAGGTAACAAGAGACCTGGTGCCTTTGCCCTTTTCTTGGAA 234701 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 || ||||| ||||||| || || || | || || | |||| || || | ||||| Sbjct 234700 CCATGGCACGCAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGG---TAAAGAA 234644 Query 110835 CAAA---GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 ||| | ||| | |||||||| ||| |||||||| | || | || ||||||||| Sbjct 234643 GAAATTCGTGCAAGGGATTTATTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGT 234584 Query 110892 GTTCAAGAAAATGG 110905 |||||||| |||| Sbjct 234583 GTTCAAGAGGATGG 234570 >seq5 Length=565208 Score = 156 bits (172), Expect = 1e-32 Identities = 560/865 (65%), Gaps = 18/865 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||||||||||||| | |||||| |||||||||| | |||| || | | Sbjct 295262 TATTTTGGTTTCAAAACTTTGGAACGTTCTTATTTACTAAGAATCAACGGTCAAGTGGCC 295321 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| |||||| | || | | || || | || || || || || || || Sbjct 295322 GAACGTCCACAACACTTAATTATGAGAGTCGCACTGGGCATCCACGGCAGAGACATCGAA 295381 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 || | | | ||| ||| | || | | ||| | || |||||| |||| || Sbjct 295382 GCGGCTCTAGAAACATATAACTTAATGTCTCTAAAATACTTTACTCATGCCTCTCCAACT 295441 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542 | ||||| || || ||| | ||| || | ||||| |||||| | | || || Sbjct 295442 TTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTG-TTTCTTGGTCGCCATGAA 295500 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || || ||||| || |||||||| || || | |||||| |||| | ||||| |||| Sbjct 295501 GGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCTTTGATTTCCAAAAC 295560 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| | || | ||| ||||||| |||| || | | || || Sbjct 295561 TGCTGGTGGTATTGGTCTACATATCCATAATATTCGTTCAACTGGTTCTTACATTGCTGG 295620 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| | || | || | |||| ||| | | || || || |||| || Sbjct 295621 TACAAACGGTACCTCTAACGGGTTAATTCCCATGATTCGTGTTTTTAATAACACCGCCCG 295680 Query 110723 ATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | || |||||||| | || |||| | ||||| | || || ||||| || Sbjct 295681 TTATGTCGACCAGGGTGGTAACAAAAGACCTGGCGCCTTTGCCCTGTACCTGGAACCATG 295740 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| | ||||| ||||| || | || | | || || || || | ||||| ||| Sbjct 295741 GCATGCTGATATTTTTGATTTTATTGATATCAGAAAGAACCACGG---TAAAGAAGAAAT 295797 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| ||| ||| | |||||| | ||| | |||||||| |||||| | Sbjct 295798 TCGTGCAAGAGATTTGTTTCCTGCTCTATGGATTCCTGATCTTTTCATGAAGCGTGTTGA 295857 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCT-CATCGTTCTCCTGGTCTATCTGA-TGTA 110954 ||| ||||| | ||| || | | | ||| || | ||||||||||| || ||| Sbjct 295858 AGAGAATGGGACTTGGACTTTGTTCTCTCCAACAGCCG-CTCCTGGTCTAAGCGACTGT- 295915 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 ||||| | |||||||||| || || || ||||||||||| | | || Sbjct 295916 TATGGCGACGAGTTTGAAGCTCTATATACCCGCTACGAAAAAGAAGG---TCGTGGTAAG 295972 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 ||| |||||| || | |||| || | ||| ||||| |||||| || || Sbjct 295973 ACCATTAAGGCTCAAAAATTATGGTATTCCATTTTGGAAGCACAAACTGAAACGGGTACA 296032 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 |||| | | | ||||| ||| | || | || ||||| |||| || ||||| Sbjct 296033 CCTTTTGTCGTTTATAAGGATGCTTGCAACAGAAAGTCTAACCAAAAAAACTTAGGTGTT 296092 Query 111135 ATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||||| || || ||||||| Sbjct 296093 ATCAAGTCATCAAACTTATGCTGTG 296117 >seq4 Length=1477988 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| |||||||||||| | ||||| ||| ||||||||||||||||||||||| Sbjct 210428 GATAATGATCCAGTTCTGTTCAATCGTCAACCCTCATTGCATAAAATGTCTATGATGGCT 210369 Query 305378 CATAAAGTCAAAGTATTATCTGGATT-GACATTTCGATTAAATGTAAGTGCTTGTACGCC 305436 || | ||| ||||| | || | ||| |||||| |||| ||| || || | | || Sbjct 210368 CACAGAGTGAAAGT-TATTCCGTATTCTACATTTAGATTGAATTTATCTGTTACATCTCC 210310 Query 305437 TTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTAC 305496 || ||||| ||||| || || || ||||||||| | ||||| ||||| || ||| || Sbjct 210309 ATACAATGCCGATTTCGACGGTGACGAAATGAATCTTCATGTTCCTCAGTCTGAGGAAAC 210250 Query 305497 AATGACTGAATTATCAGAAATATGTTCTGT 305526 || | | ||| | || || ||||| |||| Sbjct 210249 AAGGGCAGAACTGTCCCAATTATGTGCTGT 210220 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCAT 304943 ||||||| |||| |||| || | ||||||||||| |||||||| || | || || | Sbjct 210854 TTACAATTTCATGTTGCCACTTATATGGATAATGATATTGCTGGTCAACCA--CAAGC-T 210798 Query 304944 CT-CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 || |||| || || | || |||| |||| | || | || |||||||||||| Sbjct 210797 CTACAAAAGTCCGGTCGTCCCGTAAAATCTATTCGTGCTCGTTTGAAGGGTAAAGAGGGT 210738 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAG 305049 ||||| |||||||| ||||||| || |||||||||||| ||||| Sbjct 210737 CGTATCAGAGGTAATTTAATGGGTAAGCGTGTTGATTTTTCAGCAAG 210691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812541497337