Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10 143 2e-29 seq2 134 1e-26 >seq10 Length=743843 Score = 143 bits (158), Expect = 2e-29 Identities = 389/589 (66%), Gaps = 15/589 (3%) Strand=Plus/Plus Query 43709 TTTCCAATTCAA-TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTG 43767 ||||| |||| || ||||| || |||||| || || || | || || || || Sbjct 390861 TTTCCCTATCAAGTACCATGAAATCTGGCAAGCTTATAAGCGTGCCGAAGCCTCTTTCTG 390920 Query 43768 GACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAA--AACCA 43825 ||| || |||||| |||||||| |||| || | |||||| | || ||| | Sbjct 390921 GACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGATTGGAATAACAGAATGAACGA 390980 Query 43826 CAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 || || | | |||||| ||| ||| | || ||||| || || ||||| || || Sbjct 390981 AAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGCCGCTTCTGACGGTATTGT 391040 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 |||||||| |||||| || | ||||||||| | ||||| ||| |||| Sbjct 391041 TAATGAAAACTTGGTTGAAAACTTCTCCACCGAAGTTCAAGTTCCAGAGGCAAAGAGTTT 391100 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 ||||| || ||||| || |||||||||||||| |||| ||| | |||| || Sbjct 391101 CTATGGTTTCCAAATCATGATTGAAAATATTCATTCTGAAACCTACTCCTTGTTGATCGA 391160 Query 44005 TACGTACATCAAAGA----TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAG 44060 ||| |||||||| || || | | ||| || ||||| ||||| || | || Sbjct 391161 TACCTACATCAAGGACCCTAAGGAAAGTGAA--TTC--TTGTTCAATGCCATTCACACCA 391216 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGATT 44117 | || | || | || || || ||||| || | |||||| | | | | | | Sbjct 391217 TCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGCTGACGCCT 391276 Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 ||||| ||| |||| ||||| ||||| | | ||||| | ||||| || || || | Sbjct 391277 TGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTATCGAAGGTGTCTTCTTCTCCGGTTCCT 391336 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 | || |||| || ||||| ||||| ||||| ||||||| || ||||| || || || | Sbjct 391337 TCGCCTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCCGGTTTGACCTTCTCTAACG 391396 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 | || || | | || ||||| || || ||| ||||| |||||||| Sbjct 391397 AATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGCATGCTTGTT 391445 >seq2 Length=835812 Score = 134 bits (148), Expect = 1e-26 Identities = 310/466 (67%), Gaps = 22/466 (5%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 || || || |||||| ||| || || |||||||| ||| | || ||| | | || | Sbjct 410099 TACGGTCCTCCGGGTACTGGTAAGACCTTAATTGCAAGAAAGATTGGTACAATGCTGAAT 410040 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | ||| | || |||||| || || ||||||||||| || | ||| || || ||| Sbjct 410039 GCCAAAGAGCC---CAAAATCGTGAACGGTCCTGAAATTTTGAGTAAGTACGTTGGTTCT 409983 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA-----AACGTT 19531 || || |||||| | || |||||| || ||||||| |||| | || | | Sbjct 409982 TCAGAGGAAAATATTCGTAATTTGTTCAAGGATGCTGAAGCAGAATATCGGGCCAAGGGT 409923 Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 ||| || || || || || || || | |||||| |||| | | | |||| Sbjct 409922 GAGG-----AATCCTCCTTACATATCATTATTTTCGATGAACTGGATTCTGTTTTCAAGC 409868 Query 19592 AAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 | |||||||| || || | || ||| ||||| ||| || |||||| | | Sbjct 409867 AGAGAGGTTCAAGAGGTGATGGTACCGGTGTAGGTGACAATGTAGTTAATCAATTATTAG 409808 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 | ||| | || |||||| | ||| ||||||||||||| |||||||| ||||| || | Sbjct 409807 CCAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTATTGGTATGACCAACCGTA 409748 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 ||| |||||||| || || | ||||| || ||| | || ||| | | | |||||| Sbjct 409747 AGGATTTAATAGATAGTGCTCTTTTACGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTC 409688 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | ||||| |||||| ||| | | ||||||| |||| || || Sbjct 409687 ATTTACCGGATGAAAAAGGAAGACTCCAAATTTTCGACATCCAGAC 409642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455917652085