Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq12 116 3e-21 seq5 105 6e-18 seq11 84.2 2e-11 >seq12 Length=1023116 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||| || || | ||||| || |||| || | || || || ||||||||||||||||| Sbjct 59611 ATTACCACCCCTCAACCTTAAGACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTC 59670 Query 27077 -GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | | | ||| || | ||||| || || |||||||| |||| | | |||||| || | Sbjct 59671 GGATAACGTTCTGC-CATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTG 59729 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | ||| || ||||| |||||| | |||| | | || | |||||| | | || Sbjct 59730 GAGGAATACCTTCCTTATCCTGAATCTTGCTCTTCACGTTGTCAATAGTGTCAGACGATT 59789 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| || || ||||| | || || ||||| || || |||||||| |||||| Sbjct 59790 CAACCTCGAGGGTTATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCATA 59842 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCT 27095 || ||||||||||| ||||| || ||||| || ||||||||| || | | | ||||| Sbjct 59858 AACACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCT 59917 Query 27096 TCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCG 27155 || || || ||||| || | || | | ||||||||| || || | ||| ||||| || Sbjct 59918 TCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTGTCC 59977 Query 27156 GCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGAT 27215 || || || | | | || | |||||| | | |||||| || || ||||| | | Sbjct 59978 TGAATTTTTGACTTGACGTTATCAATAGTGTCAGACGATTCAACCTCGAGGGTTATGGTT 60037 Query 27216 TTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| || || || || || |||||| Sbjct 60038 TTACCCGTCAGTGTCTTAACGAAAATCTGCATA 60070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| | ||| ||||| || | ||||| || ||||||||||||||||| | | Sbjct 60299 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGAT 60358 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| | | ||||| || || |||||||| |||| | | |||||| || || || Sbjct 60359 AACGTT-CTACCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGG 60417 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| || || || | | | || | ||||| | | ||| || Sbjct 60418 AATACCTTCCTTATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGAC 60477 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || ||||| || || |||||||| |||||| Sbjct 60478 CTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCATA 60526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCT 27095 || ||||||||||| || || || ||||| || ||||||||| || | | | ||||| Sbjct 60542 AACACCAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCT 60601 Query 27096 TCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCG 27155 || || || ||||| || | || | | ||| ||||| || || | ||| ||||| || Sbjct 60602 TCCAGTTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGAGGAATACCTTCTTTGTCC 60661 Query 27156 GCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGAT 27215 || || || | | | || | ||| || | | ||| ||||| | ||||| | | Sbjct 60662 TGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGACTTCCAATGTTATGGTT 60721 Query 27216 TTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||| ||| || ||||| ||||||||| Sbjct 60722 TTACCGGTCAAAGTCTTGACAAAAATTTGCATA 60754 >seq5 Length=565208 Score = 105 bits (116), Expect = 6e-18 Identities = 394/615 (64%), Gaps = 11/615 (2%) Strand=Plus/Minus Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695 || |||| |||||| |||||||| || | ||| || | ||||| || |||| |||| Sbjct 295866 CCATTCTCTTCAACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGAAACAAATCT 295807 Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCC 131755 || || | |||||| |||| | ||| | | || | ||| || ||||| || Sbjct 295806 CTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCA 295747 Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCC------TTTGCGCTTACCGCCTTGA 131809 |||||||| ||||||| |||| || | ||||| |||| ||||| || || Sbjct 295746 GCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTG---TTACCACCCTGG 295690 Query 131810 TTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTT 131869 | |||| ||| | |||| || | || || | |||||| || ||||| | | | Sbjct 295689 TCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTA 295630 Query 131870 CCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATA 131929 || || || | |||||| ||| | | | || || || | | || |||||| Sbjct 295629 CCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATA 295570 Query 131930 CCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCAC 131988 || || || || ||| || || | || |||| | | ||||| || ||||| || | Sbjct 295569 CCACCAGCAGT-TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGAT 295511 Query 131989 GCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGC 132048 |||| | ||| |||| || || |||||||||| || | | || || || Sbjct 295510 AGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGC 295451 Query 132049 TGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATGCACCGATACGATTG 132108 |||||| || || ||| || ||||| |||| | ||| | ||| | || Sbjct 295450 ATTAAACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTC 295391 Query 132109 TATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGCATGTACATGTGTTG 132168 || ||| | ||||| || | || ||| || |||||| | ||| | |||||| Sbjct 295390 TAGAGCCGCTTCGATGTCTCTGCCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTG 295331 Query 132169 AATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAAATAACCGTTTTCCAAAGTTTTGAA 132228 || |||||| || |||| |||| | | |||||| ||||||||||||||| Sbjct 295330 TGGACGTTCGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTGAA 295271 Query 132229 ACCAAAATATTTGTA 132243 ||||||||| |||| Sbjct 295270 ACCAAAATAACTGTA 295256 >seq11 Length=690553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGT 27093 ||| ||||||||||| || || || ||||| || |||||||| | | | ||| || ||| Sbjct 639479 CAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTGC-CGT 639537 Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| | || |||||||| | || | | ||||| || || || | ||| || || | Sbjct 639538 CTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCCTTGT 639597 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | ||||||| || | | || | ||||| | | ||||||||||| ||| || | Sbjct 639598 CTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATGG 639657 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTATT 27265 || || |||| ||| || || ||| | | || | || ||| |||| ||| Sbjct 639658 TCTTACCAGTCAAAGTCTTAACGAAGCTGTACAAAATTG-TAATAATTCATT 639708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934311958904