Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 318 7e-82 seq9 257 2e-63 seq10 82.4 1e-10 >seq5 Length=565208 Score = 318 bits (352), Expect = 7e-82 Identities = 900/1368 (66%), Gaps = 36/1368 (3%) Strand=Plus/Minus Query 110725 TGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGC 110784 ||||||||| |||||||||| |||||| ||||| | ||||| || || ||||||||||| Sbjct 296698 TGGTTCAAAACATTCATTATAACCCAATATTTGGGACGTGGATGCAGTAGGCATTGGTGC 296639 Query 110785 CATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAG 110842 ||| ||||| ||| | || ||| | || | ||| |||| | | | |||||| Sbjct 296638 CATGGTCAAAGA--GTTTCTAATACCATGCTTCATGACATCTTCCCTCAAAGTATCCCAA 296581 Query 110843 TCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902 || | || | || || |||||||| || |||||||| | ||||| || || Sbjct 296580 TCCCACATGCCGTAGGGTTTTTGGTCCCACATATCGAACTGAAGTATACCTTGAGAAGCT 296521 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 |||||||| | |||||||| || | || | || ||| | |||||| || ||| Sbjct 296520 GGAGAACCTTGGAAGGTTTCGTATGGTCCGTCCTTTTGAGCTAGTTCACAAGAAGCTTCC 296461 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | || || ||||| || ||||||||||| | ||| | ||| || || ||| Sbjct 296460 ATAGAGGCATGATAAATTGTTTCAAAGATTTGGATATTTAGTAAACGGGCCTCTTCAGAA 296401 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||| | | || ||| || || || || | |||||||||||||||| |||| Sbjct 296400 TCAAAGGGTAAACGTAGCAACATGAAAGTGTCAGCCAAACCTTGAACACCCAAAGCAATT 296341 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 ||||| |||| |||||| || || ||| ||||| || || |||| | ||||| Sbjct 296340 GGTCTATGTCTCATATTGGATCTTTTCGCTTCTTCAACAGGGTAGTAATTACGATCAATA 296281 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCA-----TAA 111196 |||| ||||| ||| ||||||| || | ||||| || || ||||| | || Sbjct 296280 ACTCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTGTAATTTTTTGAAGTTGTAT 296221 Query 111197 TCAAAAGT---GCGAGTCTC------TTCATTGACATACTTTGGAAGGGCGATTGATGCC 111247 | |||| || ||| |||| ||| || | ||| | ||| | || ||| Sbjct 296220 GTAGAAGTTTGGCCGTCCTCTGACGTTTCAATGA-ATGC--TGGCAAGGCAACAGAAGCC 296164 Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307 || || |||||||| || || ||| | ||| |||||| | |||||| |||||||| Sbjct 296163 AAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCACAGCATAAGTTT 296104 Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 || ||| || || || || ||||||||| ||| ||||||| |||||||| || Sbjct 296103 GATGACTTGATAACACCTAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCCTTATAA 296044 Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGC 111426 | | | || || ||||| || || |||| || | ||| | | ||| || | | Sbjct 296043 ACGACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATACCATAATTTTTGA 295984 Query 111427 GGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAA 111486 | || ||||| || | || || || ||||| || || || |||||||| Sbjct 295983 GCCT----TAATGGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATATAGAGCTTCAAA 295928 Query 111487 CTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGACAGAAAAGAGACCATT 111545 ||| || || |||| ||||| || || ||| |||| |||| | || ||| Sbjct 295927 CTCGTCGCCATAACAGTCGCTTAGACCAGGAGCGGCTGT-TGGAGAGAACAAAGTCCAAG 295869 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605 ||| || ||||| |||||||||||||| || |||||||| || | | ||| | || Sbjct 295868 TCCCATTCTCTTCAACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGAAACAAAT 295809 Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665 |||| ||| ||||| | ||| ||||| || | |||| || || | |||| Sbjct 295808 CTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATAT 295749 Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGA 111721 | || |||||||| || || || | || | | || |||| | ||| | || Sbjct 295748 CAGCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTG-TTACCACCCTGG 295690 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | ||||| || || ||| ||||| || |||| ||| ||||| | || | || | Sbjct 295689 TCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTA 295630 Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841 || ||||| || ||| ||| | | | | | || |||||| || | |||||| Sbjct 295629 CCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATA 295570 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || ||||| || || || ||||| || | | ||| | || ||||| | ||| Sbjct 295569 CCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATA 295510 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 111961 ||||||||||| |||||| | ||| ||| |||||| || ||| |||| ||||||||| Sbjct 295509 GAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCA 295450 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT-GGGACATCTTGTCGTATGTCTC 112020 || || | ||||| | || ||| | || || || | ||||| || ||||| || Sbjct 295449 TTAAACAAAGTTGGAGAGGCATGAGT-AAAGTATTTTAGAGACATTAAGTTATATGTTTC 295391 Query 112021 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 | | | || |||||| ||||||||||| | |||||| | ||| Sbjct 295390 TAGAGCCGCTTCGATGTCTCTGCCGTGGATGCCCAGTGCGACTCTCAT 295343 >seq9 Length=443128 Score = 257 bits (284), Expect = 2e-63 Identities = 918/1409 (65%), Gaps = 52/1409 (4%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGG 110765 ||| ||||||| || |||||| || ||||| |||| | |||||| |||| | || | Sbjct 233720 GTACATGTTTGAAGTCACTGGTTCGAAACATTCGTTAT-ATCCAAGAATTTGAGAAGTTG 233778 Query 110766 AGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGA---T 110820 |||| ||||||||||| ||||| ||||| ||| | | | || | | |||| | Sbjct 233779 AGGCAGTTGGCATTGGCGCCATTGTCAAAGA--GTTTCTTA-ATCCATGT--TTGACAAT 233833 Query 110821 G-CGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTC 110877 | | || ||| || ||||| || | | | | ||| || | |||| ||||||| Sbjct 233834 GTCCTTTCTTAAGGTT-TCCCAATCCCACAT-ACCAAATGGCTTAGCATTCC-ACATGTC 233890 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 ||| || || | |||| || || |||||||| || || || ||| ||||| | Sbjct 233891 AAATTGTAGAATACCTTTAGAGGCTGGAGAACCTTCGAAAGTAGAATACTTACCTTC--C 233948 Query 110938 TTCAG--CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995 ||| | ||||||||||| || || || | || ||||| |||||||| || || | Sbjct 233949 TTCTGTGCCAATTCACAGGAGGCTTCAAGAGTAGCATGATAAATGGTTTCGAAAATCTGT 234008 Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATC 111054 |||| | ||||| ||||| ||||| | |||| ||| || ||| | ||| Sbjct 234009 TTGTTCAAAGTTTGAGCTTCTTCTGATTCAAAAG-GTAGACGCAACATCATATAGGTATC 234067 Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114 || ||||||||||||||||| |||||||||| || | |||||| || |||| || Sbjct 234068 GGCCAGACCTTGAACACCCAAGGCAATAGGTCTATGCCTCATATTTGAATTTCTGGCTTC 234127 Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 ||| |||||| |||| | ||| ||||||| ||| | || | ||||| | || | Sbjct 234128 AGGAACTGGATAATAATTACGGTCGATGACTCTGTTCAAGTTATGGGTAATGACTTTAGC 234187 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT------CTCTTCA------TTGAC 111222 |||||||| | | || ||| | || | ||| |||||| | ||| Sbjct 234188 AATTTCATGTAAACTCTCGAAATTATAACTTGCAGTTTTACCATCTTCAGACATCTCGAC 234247 Query 111223 ATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTA 111282 | | ||| ||||| || || || | ||| ||||| || || ||||| | || Sbjct 234248 AAATGCTGGGAGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATA 234307 Query 111283 CTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACT 111342 ||| | ||||| ||| |||||||| ||||| || ||||| |||| |||||| | Sbjct 234308 CTCGACGATTTCACAACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGT 234367 Query 111343 CTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTT 111402 ||| |||| || || |||||||| | |||| | || || || || || || |||| || Sbjct 234368 CTTTCTGTTACATGCGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTG 234427 Query 111403 GAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCT 111461 | ||| || | ||| ||| | | ||| | ||||| || | || || ||| | Sbjct 234428 TAAAATGGCATACCATAACTTTTG-GGC---TTTAATGGTTTTACCACGACCTTCCCTTT 234483 Query 111462 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 111521 |||| || || || ||||||| || |||||| | || | |||||| || Sbjct 234484 CGTAACGGGTATATAGCTCTTCAAATTCGTCACCCCAGACATCATCTAAACCTGGGGCAG 234543 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 ||| | || | || ||| ||||| | || | ||| || ||||| |||||||| | Sbjct 234544 CACTGGGAGAAAATAAAGTCCAGGGACCATCCTCTTGAACACGTTTCATAAAAAGGTCAG 234603 Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 |||||||||| | | || | ||| || ||| ||||| | ||| ||| | || Sbjct 234604 GAATCCACAGAGCAGGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTC 234663 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT-CAAGATA-----GACTGCGA 111695 | || | || || | |||||| ||||||||||| | ||||| | | || Sbjct 234664 TAATATCGACAAAGTCGAAGATATCTGCGTGCCATGGTTCCAAGAAAAGGGCAAAGGCAC 234723 Query 111696 TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 || || ||| | || |||| | ||||| || || || ||| || || |||| Sbjct 234724 CAGGTCTCTTGTTA---CCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAA 234780 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 111815 ||| ||||| | |||| ||| ||| || || || ||| ||| ||| | Sbjct 234781 TCATAGGAATCAACCCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAAC 234840 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | | || || | |||| ||| || || ||| || || ||||| || Sbjct 234841 GGATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTT 234900 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 | | ||| |||| ||||| | || ||||| ||||| |||| || ||||| || | Sbjct 234901 TCAAAGTATCATAAATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAG 234960 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 |||| || || ||| |||||||| || || | |||||| | |||||| |||| ||| Sbjct 234961 ACATTTGGGGGTGTGGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAA-ATAT 235019 Query 111996 CTT-GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 ||| |||||| | ||| |||| || |||||||| || || |||||||| || Sbjct 235020 CTTAATGACATCAAATTGTAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCT 235079 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGG 112083 | || || ||||| | || || |||||| Sbjct 235080 AGCGCCACACGCATAACCAAGTGCTGTGG 235108 >seq10 Length=743843 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| | |||| | ||| || |||||| | ||| Sbjct 391436 GCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCG 391377 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| | |||||||||||| |||| | | ||| || ||||||||||||| | Sbjct 391376 GGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGACA 391317 Query 122779 CCCTCCACACACGCAAACGC 122798 || || | | | ||||| || Sbjct 391316 CCTTCGATAGAGGCAAAGGC 391297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031866543200