Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 179 5e-40 seq2 113 6e-20 >seq5 Length=565208 Score = 179 bits (198), Expect = 5e-40 Identities = 820/1293 (63%), Gaps = 38/1293 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || ||||||| || ||| ||||| || ||||| | |||||| ||||||| ||||| Sbjct 296715 TACATATTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGACGTGGAT 296656 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || ||||| ||||||||| | ||| | | ||| | | | | | |||| Sbjct 296655 GCAGTAGGCATTGGTGCCATGGTCAAAGAGTTTCTAATACCATGCTTCATGACATCTTCC 296596 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 | | || ||||| || | || | | | | ||||||||| ||||| || Sbjct 296595 CTCAAAGTATCCCAATCCCACATGCCGTAGGGTTTTTGGTCCCACATATCGAACTGAAGT 296536 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 |||||||| || ||||| || || | || || || ||||| || || | || | | Sbjct 296535 ATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGTCCGTCCTTTTGAGCTAGT 296476 Query 118422 TC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 || | |||| | | |||| | ||||| ||||||||||| || | ||| | Sbjct 296475 TCACAAGAAGCTTCCATAGAGG----CATGATAAATTGTTTCAAAGATTTGGATATTTAG 296420 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 118537 | |||||| || |||||||| | | || ||| || || || || | ||| Sbjct 296419 TAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATGAAAGTGTCAGCCAAACC 296360 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGG 118597 ||| ||||| | ||||||| | |||||||||||| || | || || || || Sbjct 296359 TTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATCTTTTCGCTTCTTCAACAGG 296300 Query 118598 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 118657 || |||| | ||| ||||| || |||| ||| || ||||| || | ||||| || Sbjct 296299 GTAGTAATTACGATCAATAACTCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTG 296240 Query 118658 AAGCTTT------TCGTAATCAAAACT---GCGAGTCTC------TTCATTGACATACTT 118702 | ||| | ||| | || | || ||| |||| ||| || || Sbjct 296239 TAATTTTTTGAAGTTGTATGTAGAAGTTTGGCCGTCCTCTGACGTTTCAATGA-ATGCT- 296182 Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 || | ||| | || |||| ||||| |||| || || ||| | | | |||||| | Sbjct 296181 -GGCAAGGCAACAGAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAAC 296123 Query 118763 AATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 |||||| ||| |||||||| ||| || || ||||| ||||| || |||||| | Sbjct 296122 AATTTCACAGCATAAGTTTGATGACTTGATAACACCTAAGTTTTTTTGGTTAGACTTTCT 296063 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 ||| || |||||||| |||| | | || || ||||| || ||||| | | | ||| Sbjct 296062 GTTGCAAGCATCCTTATAAACGACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAAT 296003 Query 118883 AGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 | | ||| | | ||| | | ||| || | || || |||| ||||| Sbjct 296002 GGAATACCATAATTTTTGAGC---CTTAATGGTCTTACCACGACCTTCTTTTTCGTAGCG 295946 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACC--CACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000 || || || ||||||||||| || || || | | || ||| || || || | Sbjct 295945 GGTATATAGAGCTTCAAACTCGTCGCCATAACAGTCGCTTAGA--CCAGGAGCGGCTGTT 295888 Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 || |||| | || ||| ||| ||| ||||| ||||||||||| || || || ||| Sbjct 295887 GGAGAGAACAAAGTCCAAGTCCCATTCTCTTCAACACGCTTCATGAAAAGATCAGGAATC 295828 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 || || || | || | ||| | ||| |||||| | || || || | | Sbjct 295827 CATAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATA 295768 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---- 119176 || | ||| || | ||||| || ||||| ||||||||||||| || | | || Sbjct 295767 TCAATAAAATCAAAAATATCAGCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGT 295708 Query 119177 CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGG 119236 ||| | |||| |||||| ||||| | || ||| ||||| ||||||| ||| || Sbjct 295707 CTTTTG-TTACCACCCTGGTCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGGG 295649 Query 119237 AATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATC 119296 ||| | || | || || ||||| || ||| ||| | | | | | || Sbjct 295648 AATTAACCCGTTAGAGGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATATT 295589 Query 119297 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 119356 ||||| || | ||||||||| || || || || || || || || | | | | Sbjct 295588 ATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGT 295529 Query 119357 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 119416 | |||| || || ||||| ||||| |||| | |||| | ||| || |||||||| Sbjct 295528 GTCGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTG 295469 Query 119417 AGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGG 119449 ||| | || |||||||| || || | |||||| Sbjct 295468 AGGTTTTGGAGTACCAGCATTAAACAAAGTTGG 295436 >seq2 Length=835812 Score = 113 bits (124), Expect = 6e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 167948 CTACGGTCGCGTGGCGCCAAGATCTGGACTCGCTGTGAAGAGTGGTATCCAAGTTGGTGC 168007 |||||||||| | ||||||||||| || || || ||||| | |||||| ||| ||||| Sbjct 739213 CTACGGTCGCATTGCGCCAAGATCAGGCCTAGCAGTGAAAAATGGTATTCAAACCGGTGC 739272 Query 168008 GGGTGTTGTTGATCCAGACTATACGGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGGCA 168067 |||||||| || ||| || || |||||||| ||||| || | || |||||| || Sbjct 739273 TGGTGTTGTCGACAGAGATTACACTGGTGAAGTTAAAGTAGTCTTATTTAATCACTCACA 739332 Query 168068 CACAGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAA 168107 | ||||||| |||||||| || |||||| | || ||| Sbjct 739333 GAGAGATTTCGCCATCAAAAAAGGTGATCGCGTAGCCCAA 739372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435068582520