Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq12 105 5e-18 seq11 82.4 5e-11 >seq12 Length=1023116 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | || || ||| || ||| | || |||||| | Sbjct 60753 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 60694 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | || ||||| |||||| |||||||||||| |||| || | Sbjct 60693 GATACTATTGATAAC--GTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATC 60636 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || ||||| || || ||| |||| |||| | | ||||||||| |||| Sbjct 60635 AGCAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACA 60576 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||||||||| ||| |||||| |||||||| || Sbjct 60575 ACATCCAAAAGGAGTCCACTTTACATTTGGTGTT 60542 >seq11 Length=690553 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || || ||| | || || |||||||| || |||||||| Sbjct 639598 GACAAGGAAGGTATCCCACCCGACCAACAAAGATTGATCTTTGCCGGTAAGCAATTGGAA 639539 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | || || || |||||||||||||| || |||||| |||||||||||| Sbjct 639538 GACGGCAGAACTTTATCTGACTACAACATCCAAAAGGAATCCACTTTACATTTGGTTTTG 639479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862326269759