Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 161 2e-34 seq11 161 2e-34 seq9 159 8e-34 seq2 86.0 1e-11 >seq12 Length=1023116 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||| ||||| ||||||| ||||| || | || |||||| || Sbjct 470250 TCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTTCTGCC 470191 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||||| Sbjct 470190 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 470131 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || || ||||| || | ||| || |||| || || Sbjct 470130 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAAT 470071 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | |||||| || Sbjct 470070 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 470032 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| ||||||||||||||||| ||||| | |||||| |||| || ||||| |||||||| Sbjct 59632 GACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCCATCTTC 59691 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || ||||| || || || || | || |||||||| || |||||||||||||| || || Sbjct 59692 CAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCCTG 59751 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 ||||| |||||| || || ||||| || | ||| || || | || || ||||| Sbjct 59752 AATCTTGCTCTTCACGTTGTCAATAGTGTCAGACGATTCAACCTCGAGGGTTATGGTCTT 59811 Query 225684 GCCCGTCA 225691 || |||| Sbjct 59812 ACCAGTCA 59819 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||||||||| ||||| ||||| | |||||| |||| || ||||| || Sbjct 60310 TCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTACC 60369 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || ||||| || || || || | || |||||||| || |||||||||||||| Sbjct 60370 ATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTT 60429 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||| || || || ||||| || | ||| || || | || || Sbjct 60430 ATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAAT 60489 Query 225678 CGTCTTGCCCGTCA 225691 ||||| || |||| Sbjct 60490 GGTCTTACCAGTCA 60503 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||| ||||||| ||||| |||| ||| ||||| || ||||| || ||||| || Sbjct 59872 AGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAGTTGCTTACC 59931 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| ||||| | || ||||| || || ||||||||||| ||||| || || ||| ||| Sbjct 59932 AGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTTGACTT 59991 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || || || ||||| || | ||| || || | || || || || ||||||| || Sbjct 59992 GACGTTATCAATAGTGTCAGACGATTCAACCTCGAGGGTTATGGTTTTACCCGTCAGTGT 60051 Query 225696 TTTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 60052 CTTAACGAAAATCTGCAT 60069 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 |||||| || ||||||| ||||| |||| ||| ||||| || ||||| || ||||| || Sbjct 60556 AGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAGTTGCTTACC 60615 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| ||||| | || || || || || ||||||||||| ||||| || || ||| ||| Sbjct 60616 AGCAAAGATCAATCTCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTTGACTT 60675 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || || || || || || | ||| || || || || || || || || |||||||| Sbjct 60676 GACGTTATCAATAGTATCAGAAGATTCGACTTCCAATGTTATGGTTTTACCGGTCAAAGT 60735 Query 225696 TTTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 60736 CTTGACAAAAATTTGCAT 60753 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || | || | || |||||||| || | || ||||| | || ||||| || Sbjct 60082 TCTCAGCACTAAATGCAACGTAGATTCTTTCTGAATGTTATAATCAGACAGTGTTCTACC 60141 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| || ||||| ||||| || ||||||| |||||| || || || ||||| || || Sbjct 60142 GTCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGGATACCCTCTTT 60201 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| || || || || ||||| || | ||| || |||| || || Sbjct 60202 GTCTTGGATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTAT 60261 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | |||||| | || | |||||| Sbjct 60262 AGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 60297 >seq11 Length=690553 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||||||||| ||||||| ||||| || | |||||||| || Sbjct 639476 TCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTGCC 639535 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| || || ||||| | || |||||||||||| || ||||||||||| Sbjct 639536 GTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCCTT 639595 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || |||||||| || | ||| || ||||| ||||| Sbjct 639596 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGAT 639655 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||||| || |||||||| || | ||| Sbjct 639656 GGTCTTACCAGTCAAAGTCTTAACGAA 639682 >seq9 Length=443128 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||||||||||||||| | ||||| || | ||| ||||| || Sbjct 63290 TCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 63231 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||||| Sbjct 63230 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 63171 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| |||||| ||| ||| || || ||||| || | ||| || || || ||||| Sbjct 63170 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 63111 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || |||||||| || Sbjct 63110 GGTCTTACCAGTCAAAGTCTT 63090 >seq2 Length=835812 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || ||||| || || |||||||| || |||||||| Sbjct 58111 GAAAATTTGCCCATCAGTAATGGAAATGACATTGGTTGGAATATAAGCGGAGACATCACC 58052 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 |||| ||||| | ||| || ||||| |||| || ||| Sbjct 58051 ACCTTGGGTTTCAATAACGGGCAAGGCAGTTAAAGAACCA 58012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530940251798