Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11 176 9e-39 seq12 172 1e-37 seq9 165 2e-35 >seq11 Length=690553 Score = 176 bits (194), Expect = 9e-39 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| ||| ||| ||||||||||||||||||| | || | ||| || || Sbjct 639483 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTGCCGTCTTCC 639542 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || |||||||||||||| | ||||||||| || ||||| |||||||||||| Sbjct 639543 AATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGG 639602 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || || | || || ||||| |||| ||| ||||| | |||||| |||||| Sbjct 639603 ATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTA 639662 Query 283071 CCCGTCAAAGTCTTAACGAA 283090 || ||||||||||||||||| Sbjct 639663 CCAGTCAAAGTCTTAACGAA 639682 >seq12 Length=1023116 Score = 172 bits (190), Expect = 1e-37 Identities = 155/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| || || | |||||| || | ||| || || ||||| Sbjct 470226 TTCCTTTTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCAATTGCTTACCAGCAAA 470167 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||||||| || ||||| ||||||||||||||||| | || || | Sbjct 470166 GATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 470107 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| |||| ||| ||||| || || || |||||||| || |||||||| || Sbjct 470106 GTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGAC 470047 Query 283088 GAATATCTGCATTTT 283102 ||| || ||||| || Sbjct 470046 GAAAATTTGCATCTT 470032 Score = 156 bits (172), Expect = 9e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 |||| |||||| || ||| ||||||||||||||||| | |||| || | || || || Sbjct 59861 ACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTACCGTCTTC 59919 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 ||||| || || ||||||||||| | ||||| || |||||||| || ||||| || Sbjct 59920 CAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTGTCCTG 59979 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 || |||| || ||| |||| |||||||| || | ||| || ||||| || || || || Sbjct 59980 AATTTTTGACTTGACGTTATCAATAGTGTCAGACGATTCAACCTCGAGGGTTATGGTTTT 60039 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||||||||| |||||||| Sbjct 60040 ACCCGTCAGTGTCTTAACGAAAATCTGCAT 60069 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 |||| |||||| ||| || ||||||||||||||||| | |||| || | || || || Sbjct 60545 ACCAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTACCGTCTTC 60603 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 ||||| || || ||||||||||| | || || || |||||||| || ||||| || Sbjct 60604 CAGTTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGAGGAATACCTTCTTTGTCCTG 60663 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 || |||| || ||| |||| ||||| || |||| ||||||||| | || || || || Sbjct 60664 AATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGACTTCCAATGTTATGGTTTT 60723 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||||||||| || || || ||||| Sbjct 60724 ACCGGTCAAAGTCTTGACAAAAATTTGCAT 60753 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || || | ||| ||||| |||||| || ||||| || |||| Sbjct 60070 ACCACCTCTCAATCTCAGCACTAAATGCAACGTAGATTCTTTCTGAATGTTATAATCAGA 60129 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | || || || ||||| || || ||||| || | | |||||| || || Sbjct 60130 CAGTGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGG 60189 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| |||||||||||||| ||| ||| | || |||||||| |||| ||| || Sbjct 60190 GATACCCTCTTTGTCTTGGATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 60249 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || ||||| || | ||| || || || || ||||| Sbjct 60250 CTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 60297 >seq9 Length=443128 Score = 165 bits (182), Expect = 2e-35 Identities = 155/195 (79%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTG 282955 ||||| ||| ||||||||| ||||||||||||| |||| || | || || || | ||| Sbjct 63277 TGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAG-GTTCTACCGTCTTCCAATTG 63219 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 || || ||||||||||| | |||||||||| || ||||| ||||||||||| ||||| Sbjct 63218 CTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTT 63159 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || | || |||||||| |||| ||| ||||| | |||||| |||||||| || Sbjct 63158 TGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGT 63099 Query 283076 CAAAGTCTTAACGAA 283090 ||||||||| || || Sbjct 63098 CAAAGTCTTGACAAA 63084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738972007118